Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0036 and DvMF_0037 are separated by 2 nucleotides DvMF_0037 and DvMF_0038 are separated by 126 nucleotides DvMF_0038 and DvMF_0039 overlap by 4 nucleotides DvMF_0039 and DvMF_0040 overlap by 1 nucleotides
DvMF_0036: DvMF_0036 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 46,313 to 49,459
_0036
DvMF_0037: DvMF_0037 - hypothetical protein (RefSeq), at 49,462 to 50,142
_0037
DvMF_0038: DvMF_0038 - protein of unknown function DUF140 (RefSeq), at 50,269 to 51,414
_0038
DvMF_0039: DvMF_0039 - ABC transporter related (RefSeq), at 51,411 to 52,319
_0039
DvMF_0040: DvMF_0040 - Mammalian cell entry related domain protein (RefSeq), at 52,319 to 53,302
_0040
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-1
0
1
2 at 49.459 kb on + strand at 49.531 kb on + strand, within DvMF_0037 at 49.600 kb on + strand, within DvMF_0037 at 49.644 kb on + strand, within DvMF_0037 at 49.660 kb on + strand, within DvMF_0037 at 49.709 kb on - strand, within DvMF_0037 at 49.822 kb on - strand, within DvMF_0037 at 49.836 kb on + strand, within DvMF_0037 at 49.860 kb on + strand, within DvMF_0037 at 49.946 kb on - strand, within DvMF_0037 at 50.114 kb on + strand at 50.548 kb on + strand, within DvMF_0038 at 50.574 kb on - strand, within DvMF_0038 at 50.579 kb on - strand, within DvMF_0038 at 50.650 kb on + strand, within DvMF_0038 at 50.661 kb on + strand, within DvMF_0038 at 50.669 kb on - strand, within DvMF_0038 at 50.680 kb on + strand, within DvMF_0038 at 50.683 kb on - strand, within DvMF_0038 at 50.688 kb on - strand, within DvMF_0038 at 50.758 kb on + strand, within DvMF_0038 at 50.766 kb on + strand, within DvMF_0038 at 50.794 kb on - strand, within DvMF_0038 at 50.833 kb on + strand, within DvMF_0038 at 50.836 kb on - strand, within DvMF_0038 at 50.862 kb on - strand, within DvMF_0038 at 50.862 kb on - strand, within DvMF_0038 at 50.880 kb on + strand, within DvMF_0038 at 50.995 kb on + strand, within DvMF_0038 at 51.037 kb on - strand, within DvMF_0038 at 51.117 kb on + strand, within DvMF_0038 at 51.118 kb on - strand, within DvMF_0038 at 51.367 kb on - strand at 51.431 kb on - strand at 51.593 kb on + strand, within DvMF_0039 at 51.610 kb on + strand, within DvMF_0039 at 51.636 kb on + strand, within DvMF_0039 at 51.860 kb on + strand, within DvMF_0039 at 51.860 kb on + strand, within DvMF_0039 at 51.868 kb on - strand, within DvMF_0039 at 52.289 kb on - strand at 52.333 kb on + strand at 52.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 49,459 + +0.4 49,531 + DvMF_0037 0.10 +1.2 49,600 + DvMF_0037 0.20 -0.4 49,644 + DvMF_0037 0.27 -0.3 49,660 + DvMF_0037 0.29 -0.3 49,709 - DvMF_0037 0.36 +0.1 49,822 - DvMF_0037 0.53 -0.3 49,836 + DvMF_0037 0.55 -0.1 49,860 + DvMF_0037 0.58 +0.0 49,946 - DvMF_0037 0.71 -0.6 50,114 + -1.0 50,548 + DvMF_0038 0.24 -0.9 50,574 - DvMF_0038 0.27 -0.5 50,579 - DvMF_0038 0.27 +0.0 50,650 + DvMF_0038 0.33 -0.3 50,661 + DvMF_0038 0.34 -0.1 50,669 - DvMF_0038 0.35 -0.6 50,680 + DvMF_0038 0.36 -0.5 50,683 - DvMF_0038 0.36 -1.0 50,688 - DvMF_0038 0.37 -0.1 50,758 + DvMF_0038 0.43 -1.2 50,766 + DvMF_0038 0.43 -0.6 50,794 - DvMF_0038 0.46 -0.1 50,833 + DvMF_0038 0.49 -0.9 50,836 - DvMF_0038 0.49 -1.4 50,862 - DvMF_0038 0.52 +0.6 50,862 - DvMF_0038 0.52 +0.0 50,880 + DvMF_0038 0.53 -0.5 50,995 + DvMF_0038 0.63 -0.8 51,037 - DvMF_0038 0.67 -0.6 51,117 + DvMF_0038 0.74 -0.3 51,118 - DvMF_0038 0.74 -1.4 51,367 - -0.4 51,431 - +0.6 51,593 + DvMF_0039 0.20 -0.4 51,610 + DvMF_0039 0.22 -0.5 51,636 + DvMF_0039 0.25 +1.1 51,860 + DvMF_0039 0.49 -0.3 51,860 + DvMF_0039 0.49 -1.4 51,868 - DvMF_0039 0.50 -0.9 52,289 - +0.0 52,333 + -1.1 52,348 - +2.3
Or see this region's nucleotide sequence