Experiment: MoYLS4 with Ceftazidime 0.6 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0021 and DvMF_0022 are separated by 357 nucleotides DvMF_0022 and DvMF_0023 are separated by 58 nucleotides DvMF_0023 and DvMF_0024 are separated by 81 nucleotides
DvMF_0021: DvMF_0021 - stationary-phase survival protein SurE (RefSeq), at 26,913 to 27,722
_0021
DvMF_0022: DvMF_0022 - metal dependent phosphohydrolase (RefSeq), at 28,080 to 29,165
_0022
DvMF_0023: DvMF_0023 - dTMP kinase (RefSeq), at 29,224 to 29,871
_0023
DvMF_0024: DvMF_0024 - histone deacetylase superfamily (RefSeq), at 29,953 to 31,272
_0024
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1 at 27.239 kb on - strand, within DvMF_0021 at 27.366 kb on - strand, within DvMF_0021 at 27.522 kb on - strand, within DvMF_0021 at 27.654 kb on - strand at 27.658 kb on + strand at 27.659 kb on - strand at 27.818 kb on - strand at 27.847 kb on - strand at 28.247 kb on - strand, within DvMF_0022 at 28.247 kb on - strand, within DvMF_0022 at 28.255 kb on + strand, within DvMF_0022 at 28.277 kb on + strand, within DvMF_0022 at 28.327 kb on - strand, within DvMF_0022 at 28.338 kb on - strand, within DvMF_0022 at 28.453 kb on - strand, within DvMF_0022 at 28.581 kb on - strand, within DvMF_0022 at 28.790 kb on - strand, within DvMF_0022 at 28.830 kb on - strand, within DvMF_0022 at 28.888 kb on - strand, within DvMF_0022 at 28.907 kb on + strand, within DvMF_0022 at 28.910 kb on - strand, within DvMF_0022 at 28.910 kb on - strand, within DvMF_0022 at 28.943 kb on + strand, within DvMF_0022 at 29.002 kb on - strand, within DvMF_0022 at 29.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.6 mg/ml remove 27,239 - DvMF_0021 0.40 -0.9 27,366 - DvMF_0021 0.56 -0.9 27,522 - DvMF_0021 0.75 -1.0 27,654 - -0.2 27,658 + -1.2 27,659 - +0.3 27,818 - -0.3 27,847 - -0.5 28,247 - DvMF_0022 0.15 +0.4 28,247 - DvMF_0022 0.15 +0.1 28,255 + DvMF_0022 0.16 -0.8 28,277 + DvMF_0022 0.18 -1.5 28,327 - DvMF_0022 0.23 -0.6 28,338 - DvMF_0022 0.24 -1.2 28,453 - DvMF_0022 0.34 +0.8 28,581 - DvMF_0022 0.46 -0.1 28,790 - DvMF_0022 0.65 +0.1 28,830 - DvMF_0022 0.69 -1.3 28,888 - DvMF_0022 0.74 -1.8 28,907 + DvMF_0022 0.76 +0.1 28,910 - DvMF_0022 0.76 -0.9 28,910 - DvMF_0022 0.76 -1.9 28,943 + DvMF_0022 0.79 -0.5 29,002 - DvMF_0022 0.85 -0.9 29,928 + -0.6
Or see this region's nucleotide sequence