Strain Fitness in Shewanella loihica PV-4 around Shew_3812

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 50 mM
4,540,593	+				-0.2
4,540,624	-				-0.7
4,540,643	+				-0.7
4,540,684	-				-0.1
4,540,727	+				-0.7
4,540,727	+				-1.0
4,540,735	-				-0.3
4,540,846	+		Shew_3812	0.18	-1.0
4,540,846	+		Shew_3812	0.18	-1.1
4,540,846	+		Shew_3812	0.18	-0.9
4,540,854	-		Shew_3812	0.18	-1.1
4,540,854	-		Shew_3812	0.18	-0.8
4,540,897	-		Shew_3812	0.21	-0.7
4,540,997	-		Shew_3812	0.28	-1.1
4,541,080	+		Shew_3812	0.34	-1.1
4,541,160	+		Shew_3812	0.40	-1.3
4,541,173	+		Shew_3812	0.40	-0.3
4,541,174	-		Shew_3812	0.41	-1.2
4,541,181	-		Shew_3812	0.41	-0.8
4,541,209	+		Shew_3812	0.43	-1.1
4,541,209	+		Shew_3812	0.43	-0.6
4,541,217	-		Shew_3812	0.44	-1.2
4,541,217	-		Shew_3812	0.44	-0.8
4,541,281	+		Shew_3812	0.48	-1.6
4,541,333	+		Shew_3812	0.52	-0.9
4,541,342	+		Shew_3812	0.52	-1.0
4,541,367	+		Shew_3812	0.54	-2.3
4,541,491	-		Shew_3812	0.63	-0.8
4,541,517	+		Shew_3812	0.65	-0.2
4,541,524	-		Shew_3812	0.65	-0.9
4,541,524	-		Shew_3812	0.65	-1.4
4,541,524	-		Shew_3812	0.65	-1.2
4,541,538	+		Shew_3812	0.66	-0.7
4,541,569	+		Shew_3812	0.68	-1.1
4,541,577	-		Shew_3812	0.69	-0.9
4,541,582	-		Shew_3812	0.69	-0.3
4,541,582	-		Shew_3812	0.69	-0.6
4,541,626	+		Shew_3812	0.72	-0.7
4,541,633	+		Shew_3812	0.73	-0.9
4,541,633	+		Shew_3812	0.73	-1.4
4,541,633	+		Shew_3812	0.73	-2.1
4,541,633	+		Shew_3812	0.73	-0.7
4,541,641	-		Shew_3812	0.73	-0.7
4,541,647	-		Shew_3812	0.74	-1.1
4,541,654	+		Shew_3812	0.74	-1.6
4,541,654	+		Shew_3812	0.74	-1.0
4,541,654	+		Shew_3812	0.74	-1.0
4,541,654	+		Shew_3812	0.74	-0.9
4,541,654	+		Shew_3812	0.74	-0.2
4,541,654	+		Shew_3812	0.74	-0.8
4,541,654	+		Shew_3812	0.74	-1.2
4,541,654	+		Shew_3812	0.74	-0.8
4,541,654	+		Shew_3812	0.74	-2.3
4,541,654	+		Shew_3812	0.74	-1.0
4,541,654	+		Shew_3812	0.74	-0.8
4,541,654	+		Shew_3812	0.74	-0.4
4,541,654	+		Shew_3812	0.74	-1.2
4,541,654	+		Shew_3812	0.74	-0.8
4,541,654	+		Shew_3812	0.74	+1.2
4,541,654	+		Shew_3812	0.74	-0.8
4,541,654	+		Shew_3812	0.74	-0.8
4,541,654	+		Shew_3812	0.74	-1.0
4,541,654	+		Shew_3812	0.74	-0.9
4,541,654	+		Shew_3812	0.74	-0.2
4,541,654	+		Shew_3812	0.74	-1.2
4,541,654	+		Shew_3812	0.74	+1.2
4,541,654	+		Shew_3812	0.74	-0.1
4,541,654	+		Shew_3812	0.74	-1.1
4,541,654	+		Shew_3812	0.74	-1.3
4,541,654	+		Shew_3812	0.74	-0.7
4,541,654	+		Shew_3812	0.74	-0.9
4,541,654	+		Shew_3812	0.74	-0.9
4,541,654	+		Shew_3812	0.74	-0.8
4,541,654	+		Shew_3812	0.74	-1.1
4,541,654	+		Shew_3812	0.74	-0.8
4,541,654	+		Shew_3812	0.74	-1.9
4,541,654	+		Shew_3812	0.74	-1.3
4,541,654	+		Shew_3812	0.74	-1.1
4,541,654	+		Shew_3812	0.74	-0.5
4,541,654	+		Shew_3812	0.74	-0.9
4,541,654	+		Shew_3812	0.74	-0.7
4,541,654	+		Shew_3812	0.74	-0.7
4,541,654	+		Shew_3812	0.74	-1.0
4,541,654	+		Shew_3812	0.74	-1.0
4,541,654	+		Shew_3812	0.74	+0.5
4,541,654	+		Shew_3812	0.74	+0.2
4,541,654	+		Shew_3812	0.74	-1.5
4,541,659	+		Shew_3812	0.75	-0.9
4,541,659	+		Shew_3812	0.75	-1.0
4,541,661	-		Shew_3812	0.75	-2.6
4,541,662	-		Shew_3812	0.75	-0.9
4,541,662	-		Shew_3812	0.75	-2.4
4,541,662	-		Shew_3812	0.75	-1.1
4,541,662	-		Shew_3812	0.75	-0.8
4,541,662	-		Shew_3812	0.75	-0.6
4,541,662	-		Shew_3812	0.75	-1.6
4,541,662	-		Shew_3812	0.75	-1.1
4,541,662	-		Shew_3812	0.75	-0.1
4,541,662	-		Shew_3812	0.75	-0.5
4,541,662	-		Shew_3812	0.75	-1.0
4,541,662	-		Shew_3812	0.75	-1.1
4,541,662	-		Shew_3812	0.75	-1.0
4,541,662	-		Shew_3812	0.75	-0.5
4,541,662	-		Shew_3812	0.75	-0.8
4,541,662	-		Shew_3812	0.75	+0.8
4,541,662	-		Shew_3812	0.75	-1.3
4,541,662	-		Shew_3812	0.75	-0.7
4,541,662	-		Shew_3812	0.75	-1.1
4,541,662	-		Shew_3812	0.75	-0.7
4,541,662	-		Shew_3812	0.75	-1.3
4,541,662	-		Shew_3812	0.75	-0.9
4,541,662	-		Shew_3812	0.75	-0.6
4,541,662	-		Shew_3812	0.75	-0.8
4,541,662	-		Shew_3812	0.75	-0.8
4,541,662	-		Shew_3812	0.75	-0.9
4,541,662	-		Shew_3812	0.75	-1.2
4,541,662	-		Shew_3812	0.75	-1.1
4,541,662	-		Shew_3812	0.75	-1.2
4,541,662	-		Shew_3812	0.75	-2.0
4,541,664	+		Shew_3812	0.75	-1.1
4,541,672	-		Shew_3812	0.75	-0.5
4,541,672	-		Shew_3812	0.75	-0.3
4,541,683	-		Shew_3812	0.76	-1.0
4,541,737	+		Shew_3812	0.80	-0.1
4,541,743	+		Shew_3812	0.80	-0.9
4,541,743	+		Shew_3812	0.80	-0.9
4,541,745	-		Shew_3812	0.81	-0.9
4,541,745	-		Shew_3812	0.81	-1.1
4,541,746	-		Shew_3812	0.81	-0.8
4,541,746	-		Shew_3812	0.81	-1.1
4,541,746	-		Shew_3812	0.81	-1.0
4,541,752	+		Shew_3812	0.81	-1.0
4,541,758	+		Shew_3812	0.81	-1.3
4,541,794	+		Shew_3812	0.84	-1.1
4,541,794	+		Shew_3812	0.84	-0.6
4,541,794	+		Shew_3812	0.84	-1.1
4,541,794	+		Shew_3812	0.84	-2.0
4,541,794	+		Shew_3812	0.84	-0.9
4,541,794	+		Shew_3812	0.84	-1.0
4,541,794	+		Shew_3812	0.84	-1.3
4,541,794	+		Shew_3812	0.84	-0.4
4,541,802	-		Shew_3812	0.85	-0.9
4,541,802	-		Shew_3812	0.85	-0.6
4,541,820	+		Shew_3812	0.86	+1.9
4,541,870	-		Shew_3812	0.89	-0.9
4,541,946	+				-0.6
4,541,946	+				-0.6
4,541,946	+				-1.1
4,541,954	-				-0.2
4,541,954	-				-0.8
4,541,954	-				-0.8
4,541,954	-				-0.7
4,541,970	+				-0.5
4,541,985	+				-1.6
4,541,985	+				-0.6
4,541,985	+				-0.7
4,541,985	+				-0.8
4,541,985	+				-0.6
4,541,985	+				-1.0
4,541,988	-				-0.5
4,541,991	+				-1.3
4,541,993	-				-1.2
4,542,031	+				-0.9
4,542,039	-				-0.6
4,542,039	+				-0.5
4,542,039	-				-0.3
4,542,147	-		Shew_3813	0.10	+0.0
4,542,160	-		Shew_3813	0.14	-0.2
4,542,162	-		Shew_3813	0.14	-0.1
4,542,174	+		Shew_3813	0.18	-0.4
4,542,287	+		Shew_3813	0.50	-0.2
4,542,295	-		Shew_3813	0.52	+0.2
4,542,332	-		Shew_3813	0.62	-0.2
4,542,409	+		Shew_3813	0.84	-0.1
4,542,478	+				+0.3
4,542,502	+				-0.4
4,542,502	+				+0.3
4,542,569	+				-0.2
4,542,674	-				+0.3
4,542,678	+		Shew_3814	0.10	+0.3
4,542,679	+		Shew_3814	0.10	+0.2
4,542,790	+		Shew_3814	0.23	+0.6
4,542,798	-		Shew_3814	0.23	+0.4
4,542,798	-		Shew_3814	0.23	+0.6
4,542,800	+		Shew_3814	0.24	+0.2
4,542,843	-		Shew_3814	0.28	-1.2
4,542,958	+		Shew_3814	0.41	-0.4