Strain Fitness in Shewanella loihica PV-4 around Shew_3664

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 50 mM
4,365,488	+		Shew_3663	0.75	+0.5
4,365,489	+		Shew_3663	0.75	+0.4
4,365,489	+		Shew_3663	0.75	-0.0
4,365,489	+		Shew_3663	0.75	+1.3
4,365,496	+		Shew_3663	0.76	+0.1
4,365,497	-		Shew_3663	0.76	+0.2
4,365,497	-		Shew_3663	0.76	+0.0
4,365,504	-		Shew_3663	0.77	+0.7
4,365,511	+		Shew_3663	0.77	+0.2
4,365,515	+		Shew_3663	0.78	+0.5
4,365,517	+		Shew_3663	0.78	+0.7
4,365,517	+		Shew_3663	0.78	+0.3
4,365,519	-		Shew_3663	0.78	-0.3
4,365,521	-		Shew_3663	0.78	+0.6
4,365,533	+		Shew_3663	0.80	+0.1
4,365,533	+		Shew_3663	0.80	+0.0
4,365,533	+		Shew_3663	0.80	+0.9
4,365,533	+		Shew_3663	0.80	+0.1
4,365,533	+		Shew_3663	0.80	+0.1
4,365,533	+		Shew_3663	0.80	+0.6
4,365,541	-		Shew_3663	0.80	-0.1
4,365,541	-		Shew_3663	0.80	-0.6
4,365,541	-		Shew_3663	0.80	-0.1
4,365,541	-		Shew_3663	0.80	+0.0
4,365,541	-		Shew_3663	0.80	-0.2
4,365,541	-		Shew_3663	0.80	-0.2
4,365,541	-		Shew_3663	0.80	+0.6
4,365,541	-		Shew_3663	0.80	-0.1
4,365,541	-		Shew_3663	0.80	+0.2
4,365,565	-		Shew_3663	0.83	-1.3
4,365,578	+		Shew_3663	0.84	+0.3
4,365,578	+		Shew_3663	0.84	+0.2
4,365,582	+		Shew_3663	0.85	-0.2
4,365,582	+		Shew_3663	0.85	-0.3
4,365,592	+		Shew_3663	0.86	+0.3
4,365,592	+		Shew_3663	0.86	+0.3
4,365,595	-		Shew_3663	0.86	-0.0
4,365,595	-		Shew_3663	0.86	-0.2
4,365,597	-		Shew_3663	0.86	+0.3
4,365,600	-		Shew_3663	0.86	-0.2
4,365,601	+		Shew_3663	0.87	-0.1
4,365,601	+		Shew_3663	0.87	-1.6
4,365,603	+		Shew_3663	0.87	+0.1
4,365,603	+		Shew_3663	0.87	+0.4
4,365,609	-		Shew_3663	0.87	+0.6
4,365,609	-		Shew_3663	0.87	+0.1
4,365,609	-		Shew_3663	0.87	-0.1
4,365,609	-		Shew_3663	0.87	-0.8
4,365,609	-		Shew_3663	0.87	-0.0
4,365,609	-		Shew_3663	0.87	-0.9
4,365,609	-		Shew_3663	0.87	+0.7
4,365,609	-		Shew_3663	0.87	+0.1
4,365,609	-		Shew_3663	0.87	-0.3
4,365,609	-		Shew_3663	0.87	-0.0
4,365,609	-		Shew_3663	0.87	-0.2
4,365,609	-		Shew_3663	0.87	-0.1
4,365,611	-		Shew_3663	0.88	+0.3
4,365,611	-		Shew_3663	0.88	-0.2
4,365,611	+		Shew_3663	0.88	-0.0
4,365,611	-		Shew_3663	0.88	-0.1
4,365,611	-		Shew_3663	0.88	-0.1
4,365,617	-		Shew_3663	0.88	+0.0
4,365,650	+				-0.0
4,365,651	+				-0.8
4,365,651	+				+0.1
4,365,651	+				+0.5
4,365,651	+				-0.0
4,365,651	+				+0.1
4,365,651	+				+0.1
4,365,651	+				+0.2
4,365,656	+				-0.1
4,365,659	-				+0.0
4,365,659	-				-0.2
4,365,659	-				-0.9
4,365,659	-				-0.2
4,365,659	-				-0.4
4,365,659	-				-0.0
4,365,659	-				+0.1
4,365,659	-				-0.9
4,365,659	-				+0.6
4,365,663	+				+0.6
4,365,668	+				+0.2
4,365,668	+				+0.2
4,365,668	+				-0.1
4,365,668	+				+0.3
4,365,668	+				+0.2
4,365,669	+				+0.2
4,365,669	+				+0.3
4,365,671	-				+0.4
4,365,671	-				+0.2
4,365,676	-				+0.2
4,365,677	-				+0.1
4,365,693	-				+0.1
4,365,693	-				-0.3
4,365,717	-				+0.1
4,365,719	+				-0.0
4,365,747	-				+0.1
4,365,749	+				+0.1
4,365,757	-				+0.0
4,365,757	-				-0.2
4,365,759	-				-0.5
4,365,764	-				+0.5
4,365,779	+				+0.1
4,365,780	+				-0.1
4,365,785	-				+0.1
4,365,785	-				-0.4
4,365,785	-				-0.2
4,365,785	-				+0.3
4,365,789	-				+0.0
4,365,794	-				-0.2
4,365,795	-				-0.4
4,365,795	+				+0.0
4,365,796	-				-0.4
4,365,842	+				+0.0
4,365,876	+				+0.0
4,365,876	+				+0.0
4,365,884	-				+0.0
4,365,884	-				-0.0
4,365,884	-				+0.2
4,365,884	-				+0.2
4,365,904	+				-0.6
4,365,912	+				-0.0
4,365,912	+				+0.1
4,365,912	+				+0.4
4,365,912	+				-0.5
4,365,912	+				+1.3
4,365,912	+				+0.1
4,365,912	+				+0.0
4,365,912	+				+0.7
4,365,912	+				+1.0
4,365,912	+				+0.2
4,365,912	+				+0.2
4,365,912	+				+0.1
4,365,912	+				-0.3
4,365,912	+				+0.1
4,365,912	+				-0.4
4,365,920	-				+0.4
4,365,920	-				-0.2
4,365,920	-				-0.4
4,365,920	-				+0.1
4,365,920	-				+0.5
4,365,920	-				-0.0
4,365,920	-				+0.1
4,365,920	-				-1.4
4,365,920	-				-0.2
4,365,935	+				-0.6
4,365,945	+				+0.3
4,365,945	+				+0.2
4,365,945	+				-0.9
4,365,952	+				-1.7
4,365,952	+				+0.3
4,365,953	-				-0.4
4,365,955	+				+0.1
4,365,961	-				-0.9
4,365,964	+				+0.5
4,365,964	+				-0.1
4,365,964	+				+0.3
4,365,969	-				+0.0
4,365,971	+				+0.2
4,365,972	-				+0.4
4,365,973	-				+0.2
4,365,976	+				+0.3
4,365,979	-				+0.1
4,365,979	-				+0.4
4,365,999	+				+0.4
4,365,999	+				+1.2
4,365,999	+				+0.3
4,365,999	+				-0.1
4,365,999	+				+0.3
4,365,999	+				-0.5
4,365,999	+				+0.7
4,365,999	+				+0.2
4,365,999	+				-0.4
4,366,007	-				-0.6
4,366,007	-				+0.1
4,366,007	-				+0.1
4,366,007	-				+0.2
4,366,007	-				-0.3
4,366,007	-				-0.1
4,366,007	-				+0.2
4,366,016	-				+0.0
4,366,018	+				+0.4
4,366,018	+				+0.1
4,366,018	+				-0.0
4,366,018	+				-0.3
4,366,018	+				+0.4
4,366,018	+				-0.2
4,366,018	+				+0.3
4,366,018	+				+0.0
4,366,018	+				+0.4
4,366,018	+				+0.4
4,366,018	+				+0.2
4,366,018	+				+0.2
4,366,018	+				+0.3
4,366,018	+				+0.0
4,366,018	+				+0.4
4,366,018	+				-0.6
4,366,018	+				-0.3
4,366,019	-				+0.4
4,366,021	-				-0.3
4,366,026	-				+0.2
4,366,026	-				-0.1
4,366,026	-				+0.2
4,366,026	-				+0.3
4,366,026	-				+0.4
4,366,026	-				+0.1
4,366,026	-				+0.0
4,366,026	-				+0.1
4,366,026	-				-0.1
4,366,026	-				-0.1
4,366,026	-				+0.2
4,366,026	-				-0.6
4,366,026	-				-0.2
4,366,026	-				+0.1
4,366,026	-				+0.1
4,366,026	-				+0.1
4,366,026	-				+0.2
4,366,026	-				-0.2
4,366,026	-				+0.5
4,366,038	-				-0.2
4,366,041	+				-0.2
4,366,041	+				+0.1
4,366,042	+				-0.3
4,366,042	+				-0.1
4,366,049	-				+0.1
4,366,050	-				+0.0
4,366,050	-				+0.3
4,366,050	-				+0.1
4,366,090	+				+0.7
4,366,098	+				-0.2
4,366,098	-				+0.2
4,366,098	-				-0.1
4,366,098	+				-1.5
4,366,106	-				-0.1
4,366,117	-				-0.1
4,366,123	+				-0.4
4,366,129	-				-0.0
4,366,132	-				-0.5
4,366,141	+				+0.0
4,366,141	+				-0.2
4,366,141	+				+0.4
4,366,143	-				+0.1
4,366,149	-				+0.3
4,366,149	-				-0.1
4,366,149	-				-0.1
4,366,235	-				-0.5
4,366,342	+				-0.5
4,366,372	-				-0.9
4,366,486	-				-0.2
4,366,488	-				-0.3
4,366,603	+		Shew_3664	0.13	-1.1
4,366,629	+		Shew_3664	0.16	-0.7
4,366,926	+		Shew_3664	0.49	-0.4
4,367,047	-		Shew_3664	0.62	-0.2
4,367,130	-		Shew_3664	0.71	-0.5
4,367,207	+		Shew_3664	0.80	+0.7
4,367,207	+		Shew_3664	0.80	-0.4
4,367,207	+		Shew_3664	0.80	-1.0
4,367,207	+		Shew_3664	0.80	-0.8
4,367,215	-		Shew_3664	0.80	-0.5
4,367,263	+		Shew_3664	0.86	-0.7
4,367,271	-		Shew_3664	0.87	+0.1
4,367,296	+		Shew_3664	0.89	-0.9
4,367,353	+				-0.8
4,367,401	+				+0.4
4,367,409	-				+0.1
4,367,490	+				-0.0
4,367,528	+		Shew_3665	0.13	+0.6
4,367,554	+		Shew_3665	0.16	+0.0
4,367,619	+		Shew_3665	0.22	+0.4
4,367,627	-		Shew_3665	0.23	-0.7
4,367,627	-		Shew_3665	0.23	-0.2
4,367,627	-		Shew_3665	0.23	-0.5
4,367,627	-		Shew_3665	0.23	+0.4
4,367,627	-		Shew_3665	0.23	-0.7
4,367,774	+		Shew_3665	0.37	+0.2
4,367,774	+		Shew_3665	0.37	+0.1
4,367,828	+		Shew_3665	0.43	+0.4
4,367,828	+		Shew_3665	0.43	+0.4
4,367,836	-		Shew_3665	0.43	-1.0
4,367,908	-		Shew_3665	0.50	-0.7
4,367,963	-		Shew_3665	0.56	-1.0
4,367,979	+		Shew_3665	0.57	+0.5