Strain Fitness in Shewanella loihica PV-4 around Shew_3660

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 50 mM
4,360,560	-		Shew_3658	0.88	-1.9
4,360,634	-				-0.2
4,360,653	+				-0.4
4,360,669	+				-0.4
4,360,720	-				-0.1
4,360,727	+				+0.3
4,360,767	+				-0.5
4,360,856	-		Shew_3659	0.15	-0.1
4,360,879	+		Shew_3659	0.20	-0.1
4,360,887	-		Shew_3659	0.21	+0.3
4,360,952	+		Shew_3659	0.33	-0.0
4,360,978	+		Shew_3659	0.38	+0.1
4,360,996	+		Shew_3659	0.41	+0.1
4,361,004	-		Shew_3659	0.43	+0.3
4,361,004	-		Shew_3659	0.43	+0.1
4,361,094	-		Shew_3659	0.59	-0.2
4,361,271	-				-0.0
4,361,375	+				+0.1
4,361,377	+				-0.3
4,361,377	+				+0.3
4,361,385	-				+0.1
4,361,385	-				+0.3
4,361,402	-				-2.3
4,361,713	+		Shew_3660	0.20	-2.7
4,361,726	-		Shew_3660	0.21	-1.8
4,361,774	-		Shew_3660	0.24	-2.9
4,361,811	+		Shew_3660	0.27	-1.9
4,361,811	+		Shew_3660	0.27	-2.6
4,361,826	-		Shew_3660	0.28	-2.5
4,361,833	+		Shew_3660	0.28	-2.8
4,361,833	+		Shew_3660	0.28	-1.4
4,361,841	-		Shew_3660	0.29	-2.1
4,361,944	+		Shew_3660	0.37	-2.6
4,361,944	+		Shew_3660	0.37	-2.6
4,361,944	+		Shew_3660	0.37	-3.5
4,361,944	+		Shew_3660	0.37	-2.0
4,361,944	+		Shew_3660	0.37	-2.7
4,361,952	-		Shew_3660	0.37	-3.2
4,361,952	-		Shew_3660	0.37	-1.4
4,361,972	+		Shew_3660	0.39	-2.6
4,361,980	-		Shew_3660	0.39	-3.5
4,362,016	-		Shew_3660	0.42	-1.8
4,362,016	-		Shew_3660	0.42	-2.5
4,362,066	+		Shew_3660	0.46	-2.4
4,362,074	-		Shew_3660	0.46	-1.8
4,362,101	+		Shew_3660	0.48	-4.2
4,362,111	+		Shew_3660	0.49	-1.7
4,362,119	-		Shew_3660	0.50	-2.4
4,362,119	-		Shew_3660	0.50	-2.6
4,362,119	-		Shew_3660	0.50	-2.0
4,362,124	-		Shew_3660	0.50	-2.6
4,362,302	-		Shew_3660	0.63	-2.8
4,362,390	+		Shew_3660	0.70	-1.9
4,362,605	+		Shew_3660	0.85	-3.0
4,362,628	+		Shew_3660	0.87	-2.5
4,362,744	-				-2.3
4,362,905	+				+0.3
4,362,923	-				-0.0
4,362,933	+				+0.1
4,362,933	+				+0.5
4,362,952	+				-0.3
4,362,952	+				+0.1
4,362,953	-				+0.0
4,362,953	-				-0.2
4,362,953	-				-0.0
4,362,953	-				-0.1
4,362,953	-				+0.8
4,362,953	-				+0.2
4,362,960	-				+0.4
4,362,960	-				+0.2
4,362,960	-				+0.2
4,362,960	-				-0.2
4,362,960	-				+0.1
4,362,960	-				-0.2
4,363,062	-				+0.1
4,363,080	-		Shew_3661	0.11	+0.2
4,363,089	+		Shew_3661	0.13	+0.0
4,363,091	+		Shew_3661	0.14	+0.1
4,363,097	+		Shew_3661	0.15	+0.1
4,363,099	-		Shew_3661	0.16	+0.5
4,363,105	-		Shew_3661	0.17	-0.1
4,363,142	+		Shew_3661	0.27	+0.5
4,363,150	+		Shew_3661	0.30	+1.1
4,363,153	-		Shew_3661	0.30	+0.2
4,363,171	+		Shew_3661	0.35	+0.2
4,363,179	-		Shew_3661	0.37	-0.3
4,363,179	-		Shew_3661	0.37	-0.0
4,363,184	-		Shew_3661	0.39	+1.5
4,363,234	-		Shew_3661	0.52	+0.0
4,363,239	-		Shew_3661	0.54	+0.2
4,363,249	-		Shew_3661	0.56	-0.0
4,363,274	-		Shew_3661	0.63	+0.2
4,363,312	+		Shew_3661	0.73	+0.0
4,363,333	+		Shew_3661	0.79	+0.0
4,363,345	+		Shew_3661	0.82	-0.0
4,363,345	+		Shew_3661	0.82	+0.1
4,363,346	+		Shew_3661	0.83	-0.7
4,363,353	-		Shew_3661	0.85	-0.8
4,363,359	+		Shew_3661	0.86	+0.1
4,363,361	-		Shew_3661	0.87	-0.1
4,363,407	+				+0.6
4,363,409	+				+0.0
4,363,410	+				+0.4
4,363,416	+				+0.2
4,363,416	+				+0.5
4,363,416	+				+0.2
4,363,417	+				+0.3
4,363,417	-				-0.2
4,363,417	-				+0.2
4,363,417	-				-0.6
4,363,417	-				-0.2
4,363,417	-				+0.2
4,363,433	+				+1.1
4,363,433	-				+0.1
4,363,433	+				+0.6
4,363,433	+				-0.6
4,363,433	+				+0.9
4,363,433	+				-0.1
4,363,435	+				-0.3
4,363,435	+				+0.7
4,363,440	+				+0.7
4,363,440	+				-0.0
4,363,440	+				+0.1
4,363,440	+				+0.1
4,363,440	+				+0.1
4,363,440	+				-0.6
4,363,440	+				+0.1
4,363,441	-				-0.3
4,363,441	-				-0.3
4,363,441	-				-0.1
4,363,443	-				+0.0
4,363,448	-				+0.2
4,363,448	-				+0.5
4,363,448	-				-0.4
4,363,448	-				+0.3
4,363,448	-				+1.5
4,363,448	-				+0.2
4,363,448	-				+0.3
4,363,448	-				-0.7
4,363,448	-				+0.6
4,363,448	-				+0.1
4,363,448	-				-0.1
4,363,448	-				+0.2
4,363,448	-				-0.1
4,363,448	-				-0.5
4,363,448	-				+0.0
4,363,453	-				+0.1
4,363,453	-				+0.3
4,363,467	-				-0.2
4,363,469	+				-0.1
4,363,469	+				-0.3
4,363,469	+				+0.2
4,363,469	+				+0.2
4,363,471	+				+1.5
4,363,475	-				-1.5
4,363,476	+				-0.3
4,363,476	+				-0.7
4,363,476	+				+0.1
4,363,476	+				-0.2
4,363,476	+				+0.1
4,363,476	+				-0.1
4,363,476	+				-0.2
4,363,476	+				+0.5
4,363,477	-				+0.1
4,363,484	-				+0.3
4,363,484	-				-0.3
4,363,484	-				-0.4
4,363,484	-				+0.2
4,363,484	-				+0.2
4,363,484	-				+0.7
4,363,484	-				+0.4
4,363,484	-				-0.2
4,363,484	-				-0.1
4,363,484	-				+0.0
4,363,484	-				-0.5
4,363,484	-				-0.8
4,363,486	+				+0.5
4,363,486	+				-0.1
4,363,486	+				-0.1
4,363,486	+				+1.0
4,363,486	+				-0.4
4,363,486	+				+0.2
4,363,486	+				+0.2
4,363,486	+				+1.0
4,363,494	-				-0.1
4,363,494	-				-1.2
4,363,494	-				-0.3
4,363,494	-				+0.3
4,363,494	-				+0.1
4,363,494	-				-0.0
4,363,494	-				-0.1
4,363,519	+				+0.4
4,363,519	+				+0.1
4,363,519	+				+0.0
4,363,527	-				+0.2
4,363,529	+				-0.0
4,363,529	+				+0.5
4,363,529	+				+0.3
4,363,529	+				-3.1
4,363,529	+				+0.0
4,363,529	+				-1.0
4,363,529	+				-0.1
4,363,529	+				+0.1
4,363,529	+				+0.8
4,363,529	+				+1.5
4,363,529	+				-0.5
4,363,529	+				+0.4
4,363,529	+				-0.2
4,363,529	+				+0.1
4,363,529	+				+0.8
4,363,529	+				-0.6
4,363,529	+				+0.3
4,363,529	+				+0.2
4,363,529	+				+0.1
4,363,529	+				-0.3
4,363,529	+				+0.2
4,363,529	+				+0.1
4,363,529	+				+0.8
4,363,529	+				+0.1
4,363,529	+				+0.1
4,363,529	+				+0.2
4,363,529	+				-0.1
4,363,529	+				+0.3
4,363,529	+				-0.1
4,363,529	+				-0.0
4,363,529	+				+0.2
4,363,529	+				-0.6
4,363,529	+				+0.0
4,363,529	+				+0.4
4,363,529	+				-0.0
4,363,529	+				+0.2
4,363,529	+				-0.5
4,363,529	+				+0.1
4,363,529	+				+0.2
4,363,529	+				+0.2
4,363,529	+				-0.2
4,363,529	+				+0.6
4,363,529	+				-0.1
4,363,529	+				+0.2
4,363,529	+				+0.3
4,363,529	+				+0.2
4,363,529	+				-0.9
4,363,529	+				+3.2
4,363,529	+				+0.2
4,363,529	+				+0.1
4,363,529	+				-0.0
4,363,529	+				+0.1
4,363,529	+				-1.2
4,363,529	+				-0.1
4,363,529	+				-0.2
4,363,529	+				+1.4
4,363,529	+				+0.5
4,363,529	+				-0.2
4,363,529	+				+0.0
4,363,529	+				+0.1
4,363,529	+				+0.0
4,363,529	+				+0.2
4,363,531	+				+0.5
4,363,531	+				+0.1
4,363,537	-				+0.2
4,363,537	-				-0.0
4,363,537	-				-0.0
4,363,537	-				+0.1
4,363,537	-				+0.3
4,363,537	-				-0.0
4,363,537	-				-0.2
4,363,537	-				+0.0
4,363,537	-				-0.1
4,363,537	-				-0.9
4,363,537	-				-0.5
4,363,537	-				-0.6
4,363,537	-				-1.2
4,363,537	-				-0.3
4,363,537	-				+0.4
4,363,537	-				+0.1
4,363,537	-				-0.2
4,363,537	-				+0.8
4,363,537	-				+0.3
4,363,537	-				-0.1
4,363,537	-				+0.1
4,363,537	-				+0.4
4,363,537	-				+1.0
4,363,537	-				-0.4
4,363,537	-				+0.4
4,363,537	-				-0.4
4,363,537	-				+0.0
4,363,537	-				-2.1
4,363,537	-				+0.1
4,363,537	-				+0.1
4,363,537	-				+0.1
4,363,537	-				-0.0
4,363,537	-				+0.2
4,363,537	-				+0.3
4,363,537	-				+0.1
4,363,537	-				-0.2
4,363,537	-				+0.1
4,363,537	-				-0.2
4,363,537	-				-1.7
4,363,537	-				+0.3
4,363,537	-				-0.0
4,363,537	-				+1.3
4,363,537	-				+0.1
4,363,537	-				+0.0
4,363,537	-				+0.0
4,363,537	-				-0.6
4,363,537	-				-0.1
4,363,541	+				+0.6
4,363,541	+				+0.4
4,363,547	-				-0.1
4,363,547	-				+0.1
4,363,572	+				+0.3
4,363,585	-				+0.1
4,363,585	-				-0.3
4,363,599	+				-0.6
4,363,599	+				+0.1
4,363,599	+				+0.1
4,363,599	+				-0.0
4,363,599	+				+0.0
4,363,599	+				+0.2
4,363,601	-				+0.5
4,363,606	-				+0.3
4,363,607	-				+0.4
4,363,607	-				+0.3
4,363,607	-				-0.1
4,363,607	-				+0.2
4,363,607	-				+0.1
4,363,607	-				-0.2
4,363,607	-				+0.2
4,363,616	+				+0.3
4,363,617	-				-0.2
4,363,621	+				+0.4
4,363,621	+				-0.2
4,363,624	-				-0.2
4,363,626	+				+0.7
4,363,626	+				+0.0
4,363,626	+				-0.1
4,363,629	-				-0.2
4,363,629	-				-0.2
4,363,629	-				-0.2
4,363,629	-				-0.0
4,363,629	-				+0.1
4,363,634	-				-0.7
4,363,634	-				+0.2
4,363,639	+				+0.2
4,363,639	+				+0.2
4,363,639	+				+0.4
4,363,639	+				+0.4
4,363,639	+				+0.4
4,363,646	+				+0.5
4,363,647	-				-0.1
4,363,647	-				+0.0
4,363,647	-				+0.9
4,363,647	-				+0.6
4,363,647	-				+0.3
4,363,647	-				+0.0
4,363,647	-				+0.4
4,363,656	+				-0.6
4,363,656	+				+0.5
4,363,656	+				+0.1
4,363,656	+				+0.6
4,363,664	-				-0.2
4,363,666	+				+0.3
4,363,668	+				+0.5
4,363,668	-				+0.5
4,363,668	-				-0.0
4,363,668	+				-0.2
4,363,668	+				-0.1
4,363,674	-				-0.1
4,363,681	-				+0.4
4,363,761	+				+0.2
4,363,784	+				-0.5
4,363,786	+				-0.4
4,363,792	-				+0.2