Strain Fitness in Shewanella loihica PV-4 around Shew_3658

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3657 and Shew_3658 are separated by 326 nucleotidesShew_3658 and Shew_3659 are separated by 120 nucleotidesShew_3659 and Shew_3660 are separated by 131 nucleotides Shew_3657: Shew_3657 - oligopeptidase A (RefSeq), at 4,357,510 to 4,359,549 _3657 Shew_3658: Shew_3658 - hypothetical protein (RefSeq), at 4,359,876 to 4,360,652 _3658 Shew_3659: Shew_3659 - hypothetical protein (RefSeq), at 4,360,773 to 4,361,315 _3659 Shew_3660: Shew_3660 - glutathione reductase (RefSeq), at 4,361,447 to 4,362,802 _3660 Position (kb) 4359 4360 4361Strain fitness (log2 ratio) -2 -1 0 1at 4358.892 kb on + strand, within Shew_3657at 4358.945 kb on + strand, within Shew_3657at 4359.030 kb on - strand, within Shew_3657at 4359.030 kb on - strand, within Shew_3657at 4359.030 kb on - strand, within Shew_3657at 4359.061 kb on + strand, within Shew_3657at 4359.071 kb on + strand, within Shew_3657at 4359.150 kb on + strand, within Shew_3657at 4359.189 kb on + strand, within Shew_3657at 4359.232 kb on - strand, within Shew_3657at 4359.309 kb on + strand, within Shew_3657at 4359.309 kb on + strand, within Shew_3657at 4359.309 kb on + strand, within Shew_3657at 4359.414 kb on - strandat 4359.547 kb on + strandat 4359.547 kb on - strandat 4359.547 kb on - strandat 4359.881 kb on - strandat 4359.918 kb on - strandat 4360.141 kb on - strand, within Shew_3658at 4360.316 kb on - strand, within Shew_3658at 4360.334 kb on + strand, within Shew_3658at 4360.401 kb on + strand, within Shew_3658at 4360.401 kb on + strand, within Shew_3658at 4360.409 kb on - strand, within Shew_3658at 4360.409 kb on - strand, within Shew_3658at 4360.409 kb on - strand, within Shew_3658at 4360.560 kb on - strand, within Shew_3658at 4360.634 kb on - strandat 4360.653 kb on + strandat 4360.669 kb on + strandat 4360.720 kb on - strandat 4360.727 kb on + strandat 4360.767 kb on + strandat 4360.856 kb on - strand, within Shew_3659at 4360.879 kb on + strand, within Shew_3659at 4360.887 kb on - strand, within Shew_3659at 4360.952 kb on + strand, within Shew_3659at 4360.978 kb on + strand, within Shew_3659at 4360.996 kb on + strand, within Shew_3659at 4361.004 kb on - strand, within Shew_3659at 4361.004 kb on - strand, within Shew_3659at 4361.094 kb on - strand, within Shew_3659at 4361.271 kb on - strandat 4361.375 kb on + strandat 4361.377 kb on + strandat 4361.377 kb on + strandat 4361.385 kb on - strandat 4361.385 kb on - strandat 4361.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
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4,358,892 + Shew_3657 0.68 -0.3
4,358,945 + Shew_3657 0.70 -0.5
4,359,030 - Shew_3657 0.75 -0.2
4,359,030 - Shew_3657 0.75 -0.4
4,359,030 - Shew_3657 0.75 -0.5
4,359,061 + Shew_3657 0.76 +0.0
4,359,071 + Shew_3657 0.77 -0.2
4,359,150 + Shew_3657 0.80 -0.7
4,359,189 + Shew_3657 0.82 +0.6
4,359,232 - Shew_3657 0.84 -0.3
4,359,309 + Shew_3657 0.88 +0.1
4,359,309 + Shew_3657 0.88 -0.2
4,359,309 + Shew_3657 0.88 -0.3
4,359,414 - -1.3
4,359,547 + -0.1
4,359,547 - -0.1
4,359,547 - +1.5
4,359,881 - +0.4
4,359,918 - +1.0
4,360,141 - Shew_3658 0.34 -1.7
4,360,316 - Shew_3658 0.57 -0.3
4,360,334 + Shew_3658 0.59 -0.2
4,360,401 + Shew_3658 0.68 -0.5
4,360,401 + Shew_3658 0.68 -0.2
4,360,409 - Shew_3658 0.69 -0.4
4,360,409 - Shew_3658 0.69 -1.6
4,360,409 - Shew_3658 0.69 +0.3
4,360,560 - Shew_3658 0.88 -1.9
4,360,634 - -0.2
4,360,653 + -0.4
4,360,669 + -0.4
4,360,720 - -0.1
4,360,727 + +0.3
4,360,767 + -0.5
4,360,856 - Shew_3659 0.15 -0.1
4,360,879 + Shew_3659 0.20 -0.1
4,360,887 - Shew_3659 0.21 +0.3
4,360,952 + Shew_3659 0.33 -0.0
4,360,978 + Shew_3659 0.38 +0.1
4,360,996 + Shew_3659 0.41 +0.1
4,361,004 - Shew_3659 0.43 +0.3
4,361,004 - Shew_3659 0.43 +0.1
4,361,094 - Shew_3659 0.59 -0.2
4,361,271 - -0.0
4,361,375 + +0.1
4,361,377 + -0.3
4,361,377 + +0.3
4,361,385 - +0.1
4,361,385 - +0.3
4,361,402 - -2.3

Or see this region's nucleotide sequence