Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3657 and Shew_3658 are separated by 326 nucleotides Shew_3658 and Shew_3659 are separated by 120 nucleotides Shew_3659 and Shew_3660 are separated by 131 nucleotides
Shew_3657: Shew_3657 - oligopeptidase A (RefSeq), at 4,357,510 to 4,359,549
_3657
Shew_3658: Shew_3658 - hypothetical protein (RefSeq), at 4,359,876 to 4,360,652
_3658
Shew_3659: Shew_3659 - hypothetical protein (RefSeq), at 4,360,773 to 4,361,315
_3659
Shew_3660: Shew_3660 - glutathione reductase (RefSeq), at 4,361,447 to 4,362,802
_3660
Position (kb)
4359
4360
4361 Strain fitness (log2 ratio)
-2
-1
0
1 at 4358.892 kb on + strand, within Shew_3657 at 4358.945 kb on + strand, within Shew_3657 at 4359.030 kb on - strand, within Shew_3657 at 4359.030 kb on - strand, within Shew_3657 at 4359.030 kb on - strand, within Shew_3657 at 4359.061 kb on + strand, within Shew_3657 at 4359.071 kb on + strand, within Shew_3657 at 4359.150 kb on + strand, within Shew_3657 at 4359.189 kb on + strand, within Shew_3657 at 4359.232 kb on - strand, within Shew_3657 at 4359.309 kb on + strand, within Shew_3657 at 4359.309 kb on + strand, within Shew_3657 at 4359.309 kb on + strand, within Shew_3657 at 4359.414 kb on - strand at 4359.547 kb on + strand at 4359.547 kb on - strand at 4359.547 kb on - strand at 4359.881 kb on - strand at 4359.918 kb on - strand at 4360.141 kb on - strand, within Shew_3658 at 4360.316 kb on - strand, within Shew_3658 at 4360.334 kb on + strand, within Shew_3658 at 4360.401 kb on + strand, within Shew_3658 at 4360.401 kb on + strand, within Shew_3658 at 4360.409 kb on - strand, within Shew_3658 at 4360.409 kb on - strand, within Shew_3658 at 4360.409 kb on - strand, within Shew_3658 at 4360.560 kb on - strand, within Shew_3658 at 4360.634 kb on - strand at 4360.653 kb on + strand at 4360.669 kb on + strand at 4360.720 kb on - strand at 4360.727 kb on + strand at 4360.767 kb on + strand at 4360.856 kb on - strand, within Shew_3659 at 4360.879 kb on + strand, within Shew_3659 at 4360.887 kb on - strand, within Shew_3659 at 4360.952 kb on + strand, within Shew_3659 at 4360.978 kb on + strand, within Shew_3659 at 4360.996 kb on + strand, within Shew_3659 at 4361.004 kb on - strand, within Shew_3659 at 4361.004 kb on - strand, within Shew_3659 at 4361.094 kb on - strand, within Shew_3659 at 4361.271 kb on - strand at 4361.375 kb on + strand at 4361.377 kb on + strand at 4361.377 kb on + strand at 4361.385 kb on - strand at 4361.385 kb on - strand at 4361.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM remove 4,358,892 + Shew_3657 0.68 -0.3 4,358,945 + Shew_3657 0.70 -0.5 4,359,030 - Shew_3657 0.75 -0.2 4,359,030 - Shew_3657 0.75 -0.4 4,359,030 - Shew_3657 0.75 -0.5 4,359,061 + Shew_3657 0.76 +0.0 4,359,071 + Shew_3657 0.77 -0.2 4,359,150 + Shew_3657 0.80 -0.7 4,359,189 + Shew_3657 0.82 +0.6 4,359,232 - Shew_3657 0.84 -0.3 4,359,309 + Shew_3657 0.88 +0.1 4,359,309 + Shew_3657 0.88 -0.2 4,359,309 + Shew_3657 0.88 -0.3 4,359,414 - -1.3 4,359,547 + -0.1 4,359,547 - -0.1 4,359,547 - +1.5 4,359,881 - +0.4 4,359,918 - +1.0 4,360,141 - Shew_3658 0.34 -1.7 4,360,316 - Shew_3658 0.57 -0.3 4,360,334 + Shew_3658 0.59 -0.2 4,360,401 + Shew_3658 0.68 -0.5 4,360,401 + Shew_3658 0.68 -0.2 4,360,409 - Shew_3658 0.69 -0.4 4,360,409 - Shew_3658 0.69 -1.6 4,360,409 - Shew_3658 0.69 +0.3 4,360,560 - Shew_3658 0.88 -1.9 4,360,634 - -0.2 4,360,653 + -0.4 4,360,669 + -0.4 4,360,720 - -0.1 4,360,727 + +0.3 4,360,767 + -0.5 4,360,856 - Shew_3659 0.15 -0.1 4,360,879 + Shew_3659 0.20 -0.1 4,360,887 - Shew_3659 0.21 +0.3 4,360,952 + Shew_3659 0.33 -0.0 4,360,978 + Shew_3659 0.38 +0.1 4,360,996 + Shew_3659 0.41 +0.1 4,361,004 - Shew_3659 0.43 +0.3 4,361,004 - Shew_3659 0.43 +0.1 4,361,094 - Shew_3659 0.59 -0.2 4,361,271 - -0.0 4,361,375 + +0.1 4,361,377 + -0.3 4,361,377 + +0.3 4,361,385 - +0.1 4,361,385 - +0.3 4,361,402 - -2.3
Or see this region's nucleotide sequence