Strain Fitness in Shewanella loihica PV-4 around Shew_3647

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 50 mM
4,347,881	+				+0.1
4,347,881	+				-0.5
4,347,889	-				-0.1
4,347,895	+				+0.2
4,347,903	-				-0.1
4,347,905	+				+0.3
4,347,905	+				+0.2
4,347,913	-				+0.3
4,347,913	-				+0.2
4,347,923	-				+0.4
4,347,923	-				+0.2
4,347,926	-				-1.3
4,347,935	-				-0.0
4,347,937	-				+0.3
4,347,954	+				+0.1
4,347,994	+				-0.6
4,347,994	+				+0.2
4,347,994	+				-0.1
4,347,994	+				+0.2
4,347,994	+				+0.6
4,347,994	+				-0.1
4,347,994	+				+0.9
4,348,002	-				-0.1
4,348,002	+				-0.7
4,348,013	+				+0.2
4,348,015	+				-0.1
4,348,024	+				+0.5
4,348,024	+				+0.0
4,348,024	+				+3.0
4,348,024	+				-0.2
4,348,025	-				-0.1
4,348,029	+				+0.2
4,348,029	+				+0.2
4,348,029	+				+0.1
4,348,032	-				+1.5
4,348,032	-				+0.2
4,348,032	-				+0.3
4,348,037	-				-0.5
4,348,037	-				-0.6
4,348,037	-				-0.2
4,348,040	+				+0.2
4,348,048	-				-0.4
4,348,048	-				-1.8
4,348,048	-				-2.8
4,348,048	-				-0.1
4,348,050	+				-0.0
4,348,050	+				-0.1
4,348,056	+				+0.7
4,348,056	+				-0.3
4,348,056	+				+0.2
4,348,058	+				-0.3
4,348,059	+				+1.9
4,348,059	+				+0.0
4,348,064	-				+0.1
4,348,090	-				-0.2
4,348,101	-				-0.1
4,348,102	-				+0.3
4,348,104	-				-0.1
4,348,122	-				+0.6
4,348,127	-				+0.2
4,348,127	-				-0.6
4,348,135	-				+0.1
4,348,150	+				-0.2
4,348,150	+				+0.1
4,348,150	+				-0.1
4,348,150	+				+0.6
4,348,150	+				+0.4
4,348,150	+				+0.0
4,348,150	+				-0.0
4,348,150	+				-0.1
4,348,150	+				-0.1
4,348,150	+				-0.8
4,348,150	+				-0.0
4,348,150	+				-0.0
4,348,150	+				+0.0
4,348,150	+				+0.3
4,348,150	+				+0.3
4,348,150	+				-0.2
4,348,150	+				-0.1
4,348,150	+				-0.1
4,348,150	+				+0.3
4,348,150	+				+0.2
4,348,150	+				-1.7
4,348,150	+				+0.2
4,348,150	+				-0.5
4,348,150	+				-0.4
4,348,150	+				-0.3
4,348,150	+				-0.2
4,348,150	+				+0.2
4,348,150	+				-0.2
4,348,150	+				+0.9
4,348,150	+				+0.1
4,348,150	+				-0.2
4,348,150	+				-1.2
4,348,150	+				+0.4
4,348,150	+				-0.0
4,348,155	+				+0.4
4,348,158	-				+0.3
4,348,158	-				-0.0
4,348,158	-				+0.4
4,348,158	-				+0.3
4,348,158	-				-0.3
4,348,158	-				+0.8
4,348,158	-				+0.3
4,348,158	-				-0.7
4,348,158	-				+1.2
4,348,158	-				+0.5
4,348,158	-				+0.3
4,348,158	-				+0.0
4,348,158	-				+0.5
4,348,158	-				+2.2
4,348,158	-				+0.6
4,348,158	-				+0.5
4,348,158	-				+0.2
4,348,158	-				+0.0
4,348,158	-				+0.7
4,348,158	-				+0.3
4,348,158	-				+0.1
4,348,158	-				+0.2
4,348,158	-				-0.2
4,348,158	-				+0.3
4,348,158	-				+0.1
4,348,158	-				+0.2
4,348,158	-				-0.0
4,348,158	-				+0.4
4,348,158	-				+0.4
4,348,158	-				+0.2
4,348,158	-				+0.4
4,348,158	-				-0.5
4,348,158	-				-0.4
4,348,158	-				-0.0
4,348,167	-				+1.1
4,348,168	-				-0.3
4,348,169	+				+0.0
4,348,177	-				+0.3
4,348,177	-				+0.2
4,348,177	-				-0.2
4,348,184	-				+0.4
4,348,195	+				+0.1
4,348,197	-				-0.6
4,348,203	-				+0.3
4,348,203	-				+0.6
4,348,205	+				-0.1
4,348,205	+				+0.1
4,348,205	+				-0.2
4,348,205	+				+0.0
4,348,205	+				-0.3
4,348,205	+				+0.5
4,348,205	+				+0.3
4,348,205	+				+0.5
4,348,205	+				-0.1
4,348,205	+				+0.4
4,348,212	+				+0.2
4,348,213	-				-0.4
4,348,213	-				-0.4
4,348,213	-				+0.3
4,348,213	-				-0.1
4,348,213	-				+0.4
4,348,213	-				-0.2
4,348,213	-				+0.2
4,348,213	-				+0.2
4,348,213	-				+0.5
4,348,213	-				+0.9
4,348,213	-				+1.3
4,348,213	-				+0.8
4,348,213	-				-0.0
4,348,214	+				+0.1
4,348,217	+				+0.1
4,348,217	+				+0.7
4,348,218	-				-1.0
4,348,220	-				-0.4
4,348,222	-				-0.7
4,348,225	-				-0.4
4,348,225	-				+0.6
4,348,226	+				-0.6
4,348,226	+				+0.2
4,348,226	+				+0.2
4,348,226	+				+0.1
4,348,226	+				-0.2
4,348,226	+				+0.3
4,348,226	+				-0.2
4,348,226	+				+0.3
4,348,226	+				+0.1
4,348,226	+				+0.1
4,348,226	+				+0.2
4,348,226	+				+1.1
4,348,227	-				-0.1
4,348,229	-				-0.6
4,348,231	+				+0.1
4,348,231	+				+0.5
4,348,231	+				+0.1
4,348,234	-				+0.2
4,348,234	-				-3.0
4,348,234	-				+0.4
4,348,234	-				+0.1
4,348,234	-				+0.3
4,348,234	-				+0.3
4,348,234	-				-0.9
4,348,234	-				+0.3
4,348,234	-				-0.0
4,348,234	-				+0.1
4,348,239	-				+0.1
4,348,239	-				+0.2
4,348,239	-				+0.2
4,348,239	-				+0.2
4,348,264	+				+1.1
4,348,274	+				+0.4
4,348,274	+				+0.3
4,348,274	+				-0.1
4,348,274	+				+0.1
4,348,274	+				-1.0
4,348,274	+				+0.1
4,348,274	+				+0.1
4,348,282	-				+0.2
4,348,282	-				+0.6
4,348,282	-				-0.1
4,348,282	-				+0.3
4,348,282	-				+0.3
4,348,282	-				+0.0
4,348,282	-				+0.1
4,348,282	-				+0.2
4,348,282	-				-0.2
4,348,286	+				+0.4
4,348,289	-				+0.4
4,348,294	-				+0.0
4,348,328	+				+0.8
4,348,330	+				-0.0
4,348,331	-				+0.0
4,348,335	-				+0.1
4,348,336	-				+1.7
4,348,336	-				+0.9
4,348,338	-				-0.6
4,348,400	+		Shew_3646	0.14	+0.2
4,348,408	-		Shew_3646	0.17	-0.4
4,348,442	+		Shew_3646	0.26	-1.0
4,348,446	-		Shew_3646	0.27	+0.3
4,348,452	+		Shew_3646	0.29	-0.0
4,348,475	+		Shew_3646	0.36	-0.6
4,348,475	+		Shew_3646	0.36	+0.3
4,348,475	+		Shew_3646	0.36	-0.2
4,348,488	-		Shew_3646	0.39	+0.4
4,348,488	+		Shew_3646	0.39	+0.0
4,348,496	-		Shew_3646	0.42	-0.2
4,348,498	+		Shew_3646	0.42	-0.1
4,348,498	+		Shew_3646	0.42	+0.3
4,348,498	+		Shew_3646	0.42	+0.2
4,348,498	+		Shew_3646	0.42	+0.1
4,348,498	+		Shew_3646	0.42	+0.2
4,348,506	-		Shew_3646	0.44	-0.1
4,348,506	-		Shew_3646	0.44	+1.7
4,348,506	+		Shew_3646	0.44	+0.5
4,348,506	-		Shew_3646	0.44	+0.9
4,348,506	+		Shew_3646	0.44	-0.2
4,348,506	-		Shew_3646	0.44	+0.1
4,348,506	-		Shew_3646	0.44	+0.0
4,348,506	+		Shew_3646	0.44	-0.0
4,348,513	+		Shew_3646	0.46	-0.3
4,348,521	-		Shew_3646	0.49	+0.1
4,348,531	-		Shew_3646	0.52	-0.8
4,348,543	-		Shew_3646	0.55	-0.2
4,348,551	-		Shew_3646	0.57	+0.1
4,348,551	-		Shew_3646	0.57	-0.2
4,348,551	-		Shew_3646	0.57	-0.5
4,348,554	+		Shew_3646	0.58	+0.0
4,348,562	-		Shew_3646	0.60	-0.2
4,348,566	+		Shew_3646	0.62	+0.3
4,348,586	+		Shew_3646	0.67	+0.0
4,348,588	+		Shew_3646	0.68	+0.6
4,348,589	-		Shew_3646	0.68	+0.2
4,348,597	-		Shew_3646	0.70	+0.1
4,348,624	+		Shew_3646	0.78	-0.3
4,348,624	+		Shew_3646	0.78	-0.1
4,348,645	+		Shew_3646	0.84	+0.1
4,348,650	+		Shew_3646	0.85	+0.3
4,348,663	-		Shew_3646	0.89	+0.2
4,348,703	+				+0.1
4,348,711	-				-0.1
4,348,713	+				+0.5
4,348,713	+				+0.2
4,348,713	+				-0.1
4,348,721	-				+0.4
4,348,721	-				+0.2
4,348,726	+				+0.6
4,348,739	+				-0.1
4,348,747	-				-0.3
4,348,751	+				-0.4
4,348,759	-				-0.4
4,348,759	-				-0.2
4,348,769	-				-0.4
4,348,775	+				+0.0
4,348,780	+				+0.0
4,348,781	+				+1.3
4,348,781	+				-0.4
4,348,781	+				-0.1
4,348,782	+				+0.0
4,348,789	-				+0.7
4,348,789	-				+0.1
4,348,789	-				-0.1
4,348,790	-				+0.4
4,348,790	-				+0.5
4,348,811	+				-0.0
4,348,814	-				-0.2
4,348,829	+				-0.1
4,348,865	+				+0.1
4,348,873	-				+0.0
4,348,914	-				-0.9
4,348,940	+				-0.5
4,348,945	-				-1.2
4,349,100	-		Shew_3647	0.29	-2.8
4,349,230	+		Shew_3647	0.46	-1.7
4,349,230	+		Shew_3647	0.46	-1.1
4,349,253	+		Shew_3647	0.49	-1.1
4,349,380	+		Shew_3647	0.65	-0.8
4,349,482	+		Shew_3647	0.78	-1.4
4,349,532	+		Shew_3647	0.84	-1.1
4,349,795	-				+0.6
4,349,955	+		Shew_3648	0.17	+0.6
4,350,027	+		Shew_3648	0.25	+0.2
4,350,027	+		Shew_3648	0.25	-0.1
4,350,108	-		Shew_3648	0.35	-0.2
4,350,185	-		Shew_3648	0.44	+0.0
4,350,254	+		Shew_3648	0.52	+0.7
4,350,363	-		Shew_3648	0.65	-0.4
4,350,644	-				+0.2