Strain Fitness in Shewanella loihica PV-4 around Shew_3223

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3221 and Shew_3222 are separated by 72 nucleotidesShew_3222 and Shew_3223 are separated by 175 nucleotidesShew_3223 and Shew_3224 are separated by 3 nucleotidesShew_3224 and Shew_3225 are separated by 38 nucleotides Shew_3221: Shew_3221 - hypothetical protein (RefSeq), at 3,844,542 to 3,845,702 _3221 Shew_3222: Shew_3222 - protein of unknown function DUF335, SprT (RefSeq), at 3,845,775 to 3,846,386 _3222 Shew_3223: Shew_3223 - deoxyribonuclease I (RefSeq), at 3,846,562 to 3,847,317 _3223 Shew_3224: Shew_3224 - hypothetical protein (RefSeq), at 3,847,321 to 3,848,052 _3224 Shew_3225: Shew_3225 - glutathione synthetase (RefSeq), at 3,848,091 to 3,849,038 _3225 Position (kb) 3846 3847 3848Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3846.041 kb on + strand, within Shew_3222at 3846.089 kb on + strand, within Shew_3222at 3846.202 kb on + strand, within Shew_3222at 3846.237 kb on + strand, within Shew_3222at 3846.670 kb on - strand, within Shew_3223at 3847.082 kb on - strand, within Shew_3223at 3847.254 kb on + strandat 3847.275 kb on - strandat 3847.352 kb on + strandat 3847.733 kb on + strand, within Shew_3224at 3847.836 kb on + strand, within Shew_3224at 3847.836 kb on + strand, within Shew_3224at 3847.844 kb on - strand, within Shew_3224at 3847.844 kb on - strand, within Shew_3224at 3847.844 kb on - strand, within Shew_3224at 3847.934 kb on + strand, within Shew_3224at 3847.997 kb on - strandat 3848.197 kb on + strand, within Shew_3225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
remove
3,846,041 + Shew_3222 0.43 -0.3
3,846,089 + Shew_3222 0.51 -1.2
3,846,202 + Shew_3222 0.70 +0.0
3,846,237 + Shew_3222 0.75 +0.4
3,846,670 - Shew_3223 0.14 -0.7
3,847,082 - Shew_3223 0.69 -1.0
3,847,254 + -0.0
3,847,275 - -3.5
3,847,352 + +0.8
3,847,733 + Shew_3224 0.56 +0.9
3,847,836 + Shew_3224 0.70 +0.3
3,847,836 + Shew_3224 0.70 +0.5
3,847,844 - Shew_3224 0.71 -2.8
3,847,844 - Shew_3224 0.71 -2.9
3,847,844 - Shew_3224 0.71 -3.2
3,847,934 + Shew_3224 0.84 +0.8
3,847,997 - -2.3
3,848,197 + Shew_3225 0.11 -6.6

Or see this region's nucleotide sequence