Strain Fitness in Shewanella loihica PV-4 around Shew_2926

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2924 and Shew_2925 overlap by 11 nucleotidesShew_2925 and Shew_2926 are separated by 27 nucleotidesShew_2926 and Shew_2927 are separated by 26 nucleotides Shew_2924: Shew_2924 - PhoH family protein (RefSeq), at 3,463,109 to 3,464,152 _2924 Shew_2925: Shew_2925 - putative metalloprotease (RefSeq), at 3,464,142 to 3,464,615 _2925 Shew_2926: Shew_2926 - CBS domain-containing protein (RefSeq), at 3,464,643 to 3,465,518 _2926 Shew_2927: Shew_2927 - apolipoprotein N-acyltransferase (RefSeq), at 3,465,545 to 3,467,158 _2927 Position (kb) 3464 3465 3466Strain fitness (log2 ratio) -1 0 1at 3464.761 kb on + strand, within Shew_2926at 3465.272 kb on + strand, within Shew_2926at 3465.475 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
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3,464,761 + Shew_2926 0.13 -0.8
3,465,272 + Shew_2926 0.72 -0.3
3,465,475 + +0.7

Or see this region's nucleotide sequence