Strain Fitness in Shewanella loihica PV-4 around Shew_2886

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2884 and Shew_2885 are separated by 129 nucleotidesShew_2885 and Shew_2886 are separated by 110 nucleotidesShew_2886 and Shew_2887 are separated by 174 nucleotides Shew_2884: Shew_2884 - glycine cleavage system regulatory protein-like protein (RefSeq), at 3,423,463 to 3,423,966 _2884 Shew_2885: Shew_2885 - 2OG-Fe(II) oxygenase (RefSeq), at 3,424,096 to 3,424,743 _2885 Shew_2886: Shew_2886 - rRNA (guanine-N(2)-)-methyltransferase (RefSeq), at 3,424,854 to 3,426,059 _2886 Shew_2887: Shew_2887 - sterol desaturase family protein (RefSeq), at 3,426,234 to 3,427,148 _2887 Position (kb) 3424 3425 3426 3427Strain fitness (log2 ratio) -1 0 1 2at 3423.918 kb on + strandat 3424.063 kb on - strandat 3424.073 kb on - strandat 3424.073 kb on - strandat 3424.160 kb on - strandat 3424.247 kb on + strand, within Shew_2885at 3424.247 kb on + strand, within Shew_2885at 3424.258 kb on + strand, within Shew_2885at 3424.271 kb on - strand, within Shew_2885at 3424.317 kb on - strand, within Shew_2885at 3424.457 kb on - strand, within Shew_2885at 3424.457 kb on - strand, within Shew_2885at 3424.493 kb on - strand, within Shew_2885at 3424.519 kb on + strand, within Shew_2885at 3424.650 kb on + strand, within Shew_2885at 3424.796 kb on - strandat 3424.858 kb on - strandat 3424.997 kb on - strand, within Shew_2886at 3425.193 kb on - strand, within Shew_2886at 3425.193 kb on - strand, within Shew_2886at 3425.329 kb on - strand, within Shew_2886at 3425.452 kb on + strand, within Shew_2886at 3425.533 kb on - strand, within Shew_2886at 3425.808 kb on - strand, within Shew_2886at 3425.810 kb on + strand, within Shew_2886at 3426.094 kb on + strandat 3426.245 kb on + strandat 3426.253 kb on - strandat 3426.495 kb on + strand, within Shew_2887at 3426.516 kb on - strand, within Shew_2887

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
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3,423,918 + -0.1
3,424,063 - +0.2
3,424,073 - -0.0
3,424,073 - +0.1
3,424,160 - -0.1
3,424,247 + Shew_2885 0.23 -0.4
3,424,247 + Shew_2885 0.23 -0.0
3,424,258 + Shew_2885 0.25 +0.0
3,424,271 - Shew_2885 0.27 +0.2
3,424,317 - Shew_2885 0.34 -0.0
3,424,457 - Shew_2885 0.56 -0.4
3,424,457 - Shew_2885 0.56 -0.5
3,424,493 - Shew_2885 0.61 -0.2
3,424,519 + Shew_2885 0.65 +0.3
3,424,650 + Shew_2885 0.85 -0.2
3,424,796 - -0.1
3,424,858 - -1.0
3,424,997 - Shew_2886 0.12 -0.8
3,425,193 - Shew_2886 0.28 -0.7
3,425,193 - Shew_2886 0.28 -0.8
3,425,329 - Shew_2886 0.39 -0.9
3,425,452 + Shew_2886 0.50 -0.9
3,425,533 - Shew_2886 0.56 -0.7
3,425,808 - Shew_2886 0.79 -0.5
3,425,810 + Shew_2886 0.79 -0.7
3,426,094 + -0.1
3,426,245 + +2.7
3,426,253 - +0.2
3,426,495 + Shew_2887 0.29 +1.0
3,426,516 - Shew_2887 0.31 +0.4

Or see this region's nucleotide sequence