Strain Fitness in Shewanella loihica PV-4 around Shew_2519

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2517 and Shew_2518 overlap by 8 nucleotidesShew_2518 and Shew_2519 are separated by 393 nucleotidesShew_2519 and Shew_2520 are separated by 15 nucleotides Shew_2517: Shew_2517 - ferrous iron transport protein B (RefSeq), at 2,961,319 to 2,963,613 _2517 Shew_2518: Shew_2518 - FeoA family protein (RefSeq), at 2,963,606 to 2,963,845 _2518 Shew_2519: Shew_2519 - cytochrome C family protein (RefSeq), at 2,964,239 to 2,965,207 _2519 Shew_2520: Shew_2520 - outer membrane protein, putative (RefSeq), at 2,965,223 to 2,967,334 _2520 Position (kb) 2964 2965 2966Strain fitness (log2 ratio) -1 0 1at 2964.403 kb on - strand, within Shew_2519at 2965.121 kb on - strandat 2965.556 kb on + strand, within Shew_2520

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
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2,964,403 - Shew_2519 0.17 -0.8
2,965,121 - +0.1
2,965,556 + Shew_2520 0.16 +0.7

Or see this region's nucleotide sequence