Strain Fitness in Shewanella loihica PV-4 around Shew_2173

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2172 and Shew_2173 overlap by 4 nucleotidesShew_2173 and Shew_2174 are separated by 89 nucleotides Shew_2172: Shew_2172 - surface antigen (D15) (RefSeq), at 2,527,611 to 2,529,521 _2172 Shew_2173: Shew_2173 - hypothetical protein (RefSeq), at 2,529,518 to 2,533,417 _2173 Shew_2174: Shew_2174 - fatty acid metabolism regulator (RefSeq), at 2,533,507 to 2,534,268 _2174 Position (kb) 2529 2530 2531 2532 2533 2534Strain fitness (log2 ratio) -2 -1 0 1at 2530.612 kb on + strand, within Shew_2173at 2530.612 kb on + strand, within Shew_2173at 2532.816 kb on - strand, within Shew_2173at 2534.117 kb on - strand, within Shew_2174at 2534.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
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2,530,612 + Shew_2173 0.28 -1.1
2,530,612 + Shew_2173 0.28 -1.6
2,532,816 - Shew_2173 0.85 -1.1
2,534,117 - Shew_2174 0.80 -1.9
2,534,310 + +0.1

Or see this region's nucleotide sequence