Strain Fitness in Shewanella loihica PV-4 around Shew_1620

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1619 and Shew_1620 are separated by 256 nucleotidesShew_1620 and Shew_1621 are separated by 28 nucleotidesShew_1621 and Shew_1622 are separated by 27 nucleotides Shew_1619: Shew_1619 - arginine decarboxylase (RefSeq), at 1,850,856 to 1,852,769 _1619 Shew_1620: Shew_1620 - adenosylmethionine decarboxylase (RefSeq), at 1,853,026 to 1,853,946 _1620 Shew_1621: Shew_1621 - agmatinase (RefSeq), at 1,853,975 to 1,854,898 _1621 Shew_1622: Shew_1622 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 1,854,926 to 1,855,582 _1622 Position (kb) 1853 1854Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1852.433 kb on + strand, within Shew_1619at 1853.124 kb on + strand, within Shew_1620at 1853.327 kb on - strand, within Shew_1620at 1853.732 kb on + strand, within Shew_1620at 1853.899 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
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1,852,433 + Shew_1619 0.82 -3.0
1,853,124 + Shew_1620 0.11 +0.9
1,853,327 - Shew_1620 0.33 +1.8
1,853,732 + Shew_1620 0.77 +1.4
1,853,899 + +1.7

Or see this region's nucleotide sequence