Strain Fitness in Shewanella loihica PV-4 around Shew_1348

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 50 mM
1,555,859	-	flgD	Shew_1347	0.43	-0.2
1,555,920	-	flgD	Shew_1347	0.51	-0.5
1,556,331	+				-0.6
1,556,525	-	flgE	Shew_1348	0.12	-0.7
1,557,249	-	flgE	Shew_1348	0.65	+0.1
1,557,448	+	flgE	Shew_1348	0.79	-1.4
1,557,535	-	flgE	Shew_1348	0.86	-1.4
1,557,710	+				-0.2
1,558,048	+	flgF	Shew_1349	0.16	-0.4
1,558,061	-	flgF	Shew_1349	0.18	+0.3
1,558,227	-	flgF	Shew_1349	0.40	-0.2
1,558,313	+	flgF	Shew_1349	0.52	-0.2