Strain Fitness in Shewanella loihica PV-4 around Shew_1001

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1000 and Shew_1001 are separated by 164 nucleotidesShew_1001 and Shew_1002 are separated by 296 nucleotidesShew_1002 and Shew_1003 are separated by 4 nucleotides Shew_1000: Shew_1000 - metalloendopeptidase glycoprotease family (RefSeq), at 1,158,281 to 1,159,294 _1000 Shew_1001: Shew_1001 - putative glycerol-3-phosphate acyltransferase PlsY (RefSeq), at 1,159,459 to 1,160,070 _1001 Shew_1002: Shew_1002 - dihydroneopterin aldolase (RefSeq), at 1,160,367 to 1,160,720 _1002 Shew_1003: Shew_1003 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 1,160,725 to 1,161,216 _1003 Position (kb) 1159 1160 1161Strain fitness (log2 ratio) -1 0 1at 1159.506 kb on - strandat 1159.876 kb on - strand, within Shew_1001at 1160.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
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1,159,506 - -0.9
1,159,876 - Shew_1001 0.68 -1.1
1,160,712 + -0.8

Or see this region's nucleotide sequence