Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0839 and Shew_0840 are separated by 179 nucleotides Shew_0840 and Shew_0841 are separated by 192 nucleotides Shew_0841 and Shew_0842 are separated by 91 nucleotides
Shew_0839: Shew_0839 - WD-40 repeat-containing protein (RefSeq), at 961,898 to 962,866
_0839
Shew_0840: Shew_0840 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 963,046 to 963,813
_0840
Shew_0841: Shew_0841 - hypothetical protein (RefSeq), at 964,006 to 964,380
_0841
Shew_0842: Shew_0842 - two component LuxR family transcriptional regulator (RefSeq), at 964,472 to 965,101
_0842
Position (kb) 963
964 Strain fitness (log2 ratio) -1
0
1
2 at 962.539 kb on - strand, within Shew_0839 at 962.692 kb on + strand, within Shew_0839 at 962.785 kb on + strand at 962.793 kb on - strand at 962.986 kb on - strand at 963.010 kb on - strand at 963.048 kb on - strand at 963.146 kb on - strand, within Shew_0840 at 963.288 kb on - strand, within Shew_0840 at 963.335 kb on + strand, within Shew_0840 at 963.693 kb on + strand, within Shew_0840 at 964.169 kb on - strand, within Shew_0841 at 964.210 kb on - strand, within Shew_0841 at 964.252 kb on - strand, within Shew_0841 at 964.278 kb on + strand, within Shew_0841 at 964.477 kb on + strand at 964.485 kb on - strand at 964.547 kb on + strand, within Shew_0842 at 964.725 kb on + strand, within Shew_0842
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM remove 962,539 - Shew_0839 0.66 +0.2 962,692 + Shew_0839 0.82 +0.3 962,785 + +0.4 962,793 - +2.4 962,986 - +0.0 963,010 - -0.2 963,048 - -0.2 963,146 - Shew_0840 0.13 -0.4 963,288 - Shew_0840 0.32 -0.5 963,335 + Shew_0840 0.38 -1.3 963,693 + Shew_0840 0.84 -0.1 964,169 - Shew_0841 0.43 +0.1 964,210 - Shew_0841 0.54 +0.2 964,252 - Shew_0841 0.66 +0.2 964,278 + Shew_0841 0.73 -0.2 964,477 + +0.0 964,485 - -0.0 964,547 + Shew_0842 0.12 -0.1 964,725 + Shew_0842 0.40 -0.3
Or see this region's nucleotide sequence