Strain Fitness in Shewanella loihica PV-4 around Shew_0762

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0760 and Shew_0761 overlap by 8 nucleotidesShew_0761 and Shew_0762 are separated by 69 nucleotides Shew_0760: Shew_0760 - response regulator receiver protein (RefSeq), at 861,579 to 862,400 _0760 Shew_0761: Shew_0761 - hypothetical protein (RefSeq), at 862,393 to 862,914 _0761 Shew_0762: Shew_0762 - hypothetical protein (RefSeq), at 862,984 to 864,405 _0762 Position (kb) 862 863 864 865Strain fitness (log2 ratio) -1 0 1at 862.000 kb on + strand, within Shew_0760at 862.008 kb on - strand, within Shew_0760at 862.108 kb on + strand, within Shew_0760at 862.321 kb on + strandat 862.508 kb on + strand, within Shew_0761at 862.508 kb on + strand, within Shew_0761at 862.508 kb on + strand, within Shew_0761at 862.516 kb on - strand, within Shew_0761at 862.805 kb on - strand, within Shew_0761at 862.878 kb on + strandat 862.898 kb on + strandat 862.923 kb on + strandat 864.136 kb on - strand, within Shew_0762at 864.212 kb on + strand, within Shew_0762at 864.508 kb on - strandat 864.771 kb on + strandat 864.771 kb on + strandat 864.779 kb on - strandat 864.812 kb on + strandat 864.841 kb on + strandat 865.048 kb on + strandat 865.257 kb on + strandat 865.265 kb on - strandat 865.344 kb on - strandat 865.346 kb on + strandat 865.354 kb on - strandat 865.361 kb on + strandat 865.369 kb on - strandat 865.395 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
remove
862,000 + Shew_0760 0.51 -0.0
862,008 - Shew_0760 0.52 +0.2
862,108 + Shew_0760 0.64 -0.5
862,321 + +0.4
862,508 + Shew_0761 0.22 -0.2
862,508 + Shew_0761 0.22 -0.1
862,508 + Shew_0761 0.22 -0.3
862,516 - Shew_0761 0.24 +0.1
862,805 - Shew_0761 0.79 -0.1
862,878 + +0.9
862,898 + -1.0
862,923 + -0.9
864,136 - Shew_0762 0.81 -0.8
864,212 + Shew_0762 0.86 -1.1
864,508 - -0.1
864,771 + -0.1
864,771 + +0.2
864,779 - +0.5
864,812 + -0.2
864,841 + -0.1
865,048 + +0.1
865,257 + +0.1
865,265 - +0.1
865,344 - +0.1
865,346 + -0.3
865,354 - +0.2
865,361 + +0.2
865,369 - +0.8
865,395 - -0.2

Or see this region's nucleotide sequence