Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0664 and Shew_0665 are separated by 331 nucleotides Shew_0665 and Shew_0666 are separated by 77 nucleotides
Shew_0664: Shew_0664 - NAD(P) transhydrogenase subunit alpha (RefSeq), at 753,868 to 755,037
_0664
Shew_0665: Shew_0665 - sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq), at 755,369 to 757,153
_0665
Shew_0666: Shew_0666 - sulfite reductase subunit beta (RefSeq), at 757,231 to 758,928
_0666
Position (kb) 755
756
757
758 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 754.430 kb on - strand, within Shew_0664 at 754.471 kb on - strand, within Shew_0664 at 754.499 kb on - strand, within Shew_0664 at 754.795 kb on - strand, within Shew_0664 at 754.811 kb on + strand, within Shew_0664 at 754.811 kb on + strand, within Shew_0664 at 754.819 kb on - strand, within Shew_0664 at 755.052 kb on + strand at 755.147 kb on - strand at 755.351 kb on + strand at 755.397 kb on + strand at 755.397 kb on + strand at 755.442 kb on + strand at 755.450 kb on - strand at 755.457 kb on - strand at 755.504 kb on - strand at 755.504 kb on - strand at 755.712 kb on - strand, within Shew_0665 at 755.872 kb on + strand, within Shew_0665 at 755.963 kb on - strand, within Shew_0665 at 755.965 kb on + strand, within Shew_0665 at 756.409 kb on - strand, within Shew_0665 at 756.514 kb on + strand, within Shew_0665 at 756.545 kb on - strand, within Shew_0665 at 756.948 kb on + strand, within Shew_0665 at 757.263 kb on + strand at 757.378 kb on - strand at 757.524 kb on - strand, within Shew_0666 at 757.614 kb on + strand, within Shew_0666 at 757.867 kb on + strand, within Shew_0666
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM remove 754,430 - Shew_0664 0.48 -1.5 754,471 - Shew_0664 0.52 -0.4 754,499 - Shew_0664 0.54 -0.5 754,795 - Shew_0664 0.79 -0.3 754,811 + Shew_0664 0.81 -0.0 754,811 + Shew_0664 0.81 +0.1 754,819 - Shew_0664 0.81 +0.5 755,052 + -0.2 755,147 - +0.1 755,351 + -1.9 755,397 + -1.7 755,397 + -2.8 755,442 + -0.7 755,450 - -1.8 755,457 - -2.2 755,504 - -1.8 755,504 - -1.9 755,712 - Shew_0665 0.19 -2.0 755,872 + Shew_0665 0.28 -1.9 755,963 - Shew_0665 0.33 -2.1 755,965 + Shew_0665 0.33 -2.0 756,409 - Shew_0665 0.58 -1.5 756,514 + Shew_0665 0.64 -1.5 756,545 - Shew_0665 0.66 -1.9 756,948 + Shew_0665 0.88 -2.8 757,263 + -0.9 757,378 - -4.4 757,524 - Shew_0666 0.17 -2.0 757,614 + Shew_0666 0.23 -2.4 757,867 + Shew_0666 0.37 -2.0
Or see this region's nucleotide sequence