Strain Fitness in Shewanella loihica PV-4 around Shew_0384

Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0383 and Shew_0384 are separated by 174 nucleotidesShew_0384 and Shew_0385 are separated by 236 nucleotides Shew_0383: Shew_0383 - malate dehydrogenase (RefSeq), at 432,685 to 433,932 _0383 Shew_0384: Shew_0384 - regulatory protein CsrD (RefSeq), at 434,107 to 436,017 _0384 Shew_0385: Shew_0385 - biogenesis protein MshI (RefSeq), at 436,254 to 437,132 _0385 Position (kb) 434 435 436 437Strain fitness (log2 ratio) -2 -1 0 1at 433.246 kb on + strand, within Shew_0383at 433.254 kb on - strand, within Shew_0383at 433.498 kb on + strand, within Shew_0383at 433.817 kb on + strandat 433.875 kb on - strandat 433.901 kb on + strandat 433.909 kb on - strandat 434.583 kb on + strand, within Shew_0384at 434.662 kb on + strand, within Shew_0384at 434.670 kb on - strand, within Shew_0384at 434.670 kb on - strand, within Shew_0384at 434.908 kb on - strand, within Shew_0384at 435.242 kb on + strand, within Shew_0384at 435.398 kb on + strand, within Shew_0384at 435.398 kb on + strand, within Shew_0384at 435.444 kb on + strand, within Shew_0384at 435.452 kb on - strand, within Shew_0384at 435.565 kb on - strand, within Shew_0384at 435.792 kb on - strand, within Shew_0384at 435.971 kb on + strandat 435.979 kb on - strandat 436.052 kb on + strandat 436.664 kb on + strand, within Shew_0385at 436.664 kb on + strand, within Shew_0385at 436.886 kb on - strand, within Shew_0385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM
remove
433,246 + Shew_0383 0.45 -0.9
433,254 - Shew_0383 0.46 -1.3
433,498 + Shew_0383 0.65 -1.2
433,817 + -0.9
433,875 - -2.1
433,901 + -0.2
433,909 - -0.0
434,583 + Shew_0384 0.25 -0.8
434,662 + Shew_0384 0.29 -0.4
434,670 - Shew_0384 0.29 -0.4
434,670 - Shew_0384 0.29 -1.3
434,908 - Shew_0384 0.42 -0.8
435,242 + Shew_0384 0.59 -0.4
435,398 + Shew_0384 0.68 +0.3
435,398 + Shew_0384 0.68 -0.5
435,444 + Shew_0384 0.70 -0.2
435,452 - Shew_0384 0.70 -0.4
435,565 - Shew_0384 0.76 -0.5
435,792 - Shew_0384 0.88 -1.6
435,971 + -0.2
435,979 - -0.6
436,052 + -0.6
436,664 + Shew_0385 0.47 -0.3
436,664 + Shew_0385 0.47 -0.1
436,886 - Shew_0385 0.72 -0.3

Or see this region's nucleotide sequence