Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0256 and Shew_0257 are separated by 135 nucleotides Shew_0257 and Shew_0258 are separated by 101 nucleotides
Shew_0256: Shew_0256 - hypothetical protein (RefSeq), at 274,860 to 275,438
_0256
Shew_0257: Shew_0257 - peptidase S9 prolyl oligopeptidase (RefSeq), at 275,574 to 277,652
_0257
Shew_0258: Shew_0258 - hypothetical protein (RefSeq), at 277,754 to 278,701
_0258
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -1
0
1 at 274.593 kb on + strand at 274.608 kb on - strand at 274.629 kb on - strand at 274.650 kb on - strand at 274.650 kb on - strand at 274.655 kb on + strand at 274.745 kb on - strand at 274.746 kb on + strand at 275.142 kb on - strand, within Shew_0256 at 275.142 kb on - strand, within Shew_0256 at 275.617 kb on + strand at 275.646 kb on - strand at 275.672 kb on - strand at 275.683 kb on + strand at 275.719 kb on - strand at 275.850 kb on - strand, within Shew_0257 at 275.902 kb on - strand, within Shew_0257 at 276.164 kb on + strand, within Shew_0257 at 276.365 kb on + strand, within Shew_0257 at 276.373 kb on - strand, within Shew_0257 at 276.462 kb on - strand, within Shew_0257 at 276.525 kb on + strand, within Shew_0257 at 276.532 kb on - strand, within Shew_0257 at 276.532 kb on - strand, within Shew_0257 at 276.568 kb on - strand, within Shew_0257 at 276.705 kb on - strand, within Shew_0257 at 276.901 kb on + strand, within Shew_0257 at 276.909 kb on - strand, within Shew_0257 at 276.909 kb on - strand, within Shew_0257 at 277.028 kb on + strand, within Shew_0257 at 277.028 kb on + strand, within Shew_0257 at 277.028 kb on + strand, within Shew_0257 at 277.078 kb on + strand, within Shew_0257 at 277.254 kb on + strand, within Shew_0257 at 277.264 kb on + strand, within Shew_0257 at 277.272 kb on + strand, within Shew_0257 at 277.356 kb on + strand, within Shew_0257 at 277.506 kb on + strand at 277.598 kb on - strand at 277.894 kb on + strand, within Shew_0258 at 278.082 kb on - strand, within Shew_0258 at 278.084 kb on + strand, within Shew_0258 at 278.084 kb on + strand, within Shew_0258 at 278.092 kb on - strand, within Shew_0258 at 278.092 kb on - strand, within Shew_0258 at 278.187 kb on + strand, within Shew_0258 at 278.187 kb on + strand, within Shew_0258 at 278.195 kb on - strand, within Shew_0258 at 278.453 kb on - strand, within Shew_0258 at 278.453 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM remove 274,593 + -0.3 274,608 - +0.5 274,629 - +0.9 274,650 - +0.2 274,650 - -0.0 274,655 + -1.4 274,745 - -0.2 274,746 + +0.3 275,142 - Shew_0256 0.49 +0.0 275,142 - Shew_0256 0.49 +0.3 275,617 + +0.4 275,646 - +0.1 275,672 - -0.3 275,683 + -0.1 275,719 - +0.0 275,850 - Shew_0257 0.13 -0.4 275,902 - Shew_0257 0.16 -0.7 276,164 + Shew_0257 0.28 +0.2 276,365 + Shew_0257 0.38 -0.7 276,373 - Shew_0257 0.38 +0.0 276,462 - Shew_0257 0.43 -1.4 276,525 + Shew_0257 0.46 -0.1 276,532 - Shew_0257 0.46 -0.4 276,532 - Shew_0257 0.46 +0.2 276,568 - Shew_0257 0.48 -0.1 276,705 - Shew_0257 0.54 +0.3 276,901 + Shew_0257 0.64 -0.2 276,909 - Shew_0257 0.64 -0.6 276,909 - Shew_0257 0.64 +0.0 277,028 + Shew_0257 0.70 +0.1 277,028 + Shew_0257 0.70 +0.0 277,028 + Shew_0257 0.70 -0.9 277,078 + Shew_0257 0.72 +0.1 277,254 + Shew_0257 0.81 -0.2 277,264 + Shew_0257 0.81 -0.3 277,272 + Shew_0257 0.82 -0.6 277,356 + Shew_0257 0.86 -0.1 277,506 + +0.4 277,598 - +0.1 277,894 + Shew_0258 0.15 -0.3 278,082 - Shew_0258 0.35 -0.3 278,084 + Shew_0258 0.35 +1.0 278,084 + Shew_0258 0.35 -0.1 278,092 - Shew_0258 0.36 +0.1 278,092 - Shew_0258 0.36 +0.6 278,187 + Shew_0258 0.46 -0.0 278,187 + Shew_0258 0.46 +0.2 278,195 - Shew_0258 0.47 +0.1 278,453 - Shew_0258 0.74 +0.0 278,453 - Shew_0258 0.74 +0.4 278,562 - Shew_0258 0.85 +0.2 278,562 - Shew_0258 0.85 +0.4 278,613 + +0.2
Or see this region's nucleotide sequence