Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2633

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2631 and Dshi_2632 are separated by 166 nucleotidesDshi_2632 and Dshi_2633 are separated by 50 nucleotidesDshi_2633 and Dshi_2634 are separated by 99 nucleotidesDshi_2634 and Dshi_2635 are separated by 27 nucleotides Dshi_2631: Dshi_2631 - response regulator receiver protein (RefSeq), at 2,787,540 to 2,788,244 _2631 Dshi_2632: Dshi_2632 - hypothetical protein (RefSeq), at 2,788,411 to 2,788,605 _2632 Dshi_2633: Dshi_2633 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data), at 2,788,656 to 2,790,428 _2633 Dshi_2634: Dshi_2634 - hypothetical protein (RefSeq), at 2,790,528 to 2,790,977 _2634 Dshi_2635: Dshi_2635 - pentapeptide repeat protein (RefSeq), at 2,791,005 to 2,791,742 _2635 Position (kb) 2788 2789 2790 2791Strain fitness (log2 ratio) -1 0 1 2at 2787.765 kb on - strand, within Dshi_2631at 2787.863 kb on + strand, within Dshi_2631at 2787.920 kb on + strand, within Dshi_2631at 2788.019 kb on - strand, within Dshi_2631at 2788.036 kb on - strand, within Dshi_2631at 2788.066 kb on + strand, within Dshi_2631at 2788.093 kb on - strand, within Dshi_2631at 2788.385 kb on + strandat 2788.553 kb on + strand, within Dshi_2632at 2788.578 kb on + strand, within Dshi_2632at 2790.507 kb on - strandat 2790.527 kb on - strandat 2790.528 kb on - strandat 2790.528 kb on - strandat 2790.782 kb on + strand, within Dshi_2634at 2790.782 kb on + strand, within Dshi_2634at 2790.790 kb on - strand, within Dshi_2634at 2790.790 kb on - strand, within Dshi_2634at 2790.796 kb on + strand, within Dshi_2634at 2790.821 kb on + strand, within Dshi_2634at 2790.834 kb on - strand, within Dshi_2634at 2790.987 kb on - strandat 2791.002 kb on + strandat 2791.035 kb on - strandat 2791.055 kb on - strandat 2791.129 kb on - strand, within Dshi_2635at 2791.256 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.296 kb on + strand, within Dshi_2635at 2791.311 kb on - strand, within Dshi_2635at 2791.311 kb on - strand, within Dshi_2635at 2791.362 kb on - strand, within Dshi_2635

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,787,765 - Dshi_2631 0.32 +0.5
2,787,863 + Dshi_2631 0.46 +0.1
2,787,920 + Dshi_2631 0.54 +1.6
2,788,019 - Dshi_2631 0.68 +2.4
2,788,036 - Dshi_2631 0.70 -0.3
2,788,066 + Dshi_2631 0.75 -0.5
2,788,093 - Dshi_2631 0.78 +1.5
2,788,385 + -0.4
2,788,553 + Dshi_2632 0.73 -0.4
2,788,578 + Dshi_2632 0.86 -1.1
2,790,507 - +2.4
2,790,527 - -1.5
2,790,528 - +0.0
2,790,528 - +0.9
2,790,782 + Dshi_2634 0.56 -0.2
2,790,782 + Dshi_2634 0.56 -0.8
2,790,790 - Dshi_2634 0.58 +1.0
2,790,790 - Dshi_2634 0.58 -1.3
2,790,796 + Dshi_2634 0.60 -0.2
2,790,821 + Dshi_2634 0.65 +0.2
2,790,834 - Dshi_2634 0.68 -0.5
2,790,987 - -0.3
2,791,002 + -0.5
2,791,035 - -0.2
2,791,055 - +0.3
2,791,129 - Dshi_2635 0.17 +0.4
2,791,256 + Dshi_2635 0.34 -0.5
2,791,296 + Dshi_2635 0.39 +0.6
2,791,296 + Dshi_2635 0.39 +0.8
2,791,296 + Dshi_2635 0.39 +0.2
2,791,311 - Dshi_2635 0.41 -0.4
2,791,311 - Dshi_2635 0.41 +0.0
2,791,362 - Dshi_2635 0.48 -0.5

Or see this region's nucleotide sequence