Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1808

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1806 and Dshi_1807 are separated by 270 nucleotidesDshi_1807 and Dshi_1808 are separated by 11 nucleotidesDshi_1808 and Dshi_1809 are separated by 159 nucleotides Dshi_1806: Dshi_1806 - citrate synthase I (RefSeq), at 1,879,651 to 1,880,943 _1806 Dshi_1807: Dshi_1807 - UspA domain protein (RefSeq), at 1,881,214 to 1,881,651 _1807 Dshi_1808: Dshi_1808 - amino acid carrier protein (RefSeq), at 1,881,663 to 1,883,201 _1808 Dshi_1809: Dshi_1809 - excinuclease ABC, A subunit (RefSeq), at 1,883,361 to 1,886,222 _1809 Position (kb) 1881 1882 1883 1884Strain fitness (log2 ratio) -1 0 1at 1880.929 kb on - strandat 1881.185 kb on - strandat 1881.277 kb on + strand, within Dshi_1807at 1881.728 kb on + strandat 1881.928 kb on - strand, within Dshi_1808at 1881.980 kb on + strand, within Dshi_1808at 1881.992 kb on + strand, within Dshi_1808at 1882.234 kb on - strand, within Dshi_1808at 1882.326 kb on + strand, within Dshi_1808at 1882.344 kb on - strand, within Dshi_1808at 1882.353 kb on + strand, within Dshi_1808at 1882.434 kb on + strand, within Dshi_1808at 1882.654 kb on + strand, within Dshi_1808at 1882.678 kb on + strand, within Dshi_1808at 1882.747 kb on + strand, within Dshi_1808at 1882.755 kb on - strand, within Dshi_1808at 1882.870 kb on + strand, within Dshi_1808at 1883.014 kb on + strand, within Dshi_1808at 1883.163 kb on + strandat 1883.304 kb on - strandat 1883.383 kb on + strandat 1883.406 kb on - strandat 1883.521 kb on + strandat 1883.565 kb on + strandat 1883.646 kb on + strandat 1883.844 kb on - strand, within Dshi_1809at 1883.887 kb on - strand, within Dshi_1809at 1883.916 kb on + strand, within Dshi_1809at 1884.037 kb on - strand, within Dshi_1809at 1884.188 kb on - strand, within Dshi_1809

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,880,929 - -0.5
1,881,185 - +0.6
1,881,277 + Dshi_1807 0.14 +1.6
1,881,728 + -0.1
1,881,928 - Dshi_1808 0.17 -0.4
1,881,980 + Dshi_1808 0.21 -0.5
1,881,992 + Dshi_1808 0.21 +0.1
1,882,234 - Dshi_1808 0.37 -0.5
1,882,326 + Dshi_1808 0.43 -0.4
1,882,344 - Dshi_1808 0.44 +0.2
1,882,353 + Dshi_1808 0.45 -0.4
1,882,434 + Dshi_1808 0.50 +1.0
1,882,654 + Dshi_1808 0.64 -0.9
1,882,678 + Dshi_1808 0.66 +0.1
1,882,747 + Dshi_1808 0.70 +0.0
1,882,755 - Dshi_1808 0.71 -0.3
1,882,870 + Dshi_1808 0.78 -0.2
1,883,014 + Dshi_1808 0.88 -0.1
1,883,163 + -0.6
1,883,304 - +0.9
1,883,383 + -0.5
1,883,406 - +0.4
1,883,521 + -1.3
1,883,565 + -0.1
1,883,646 + -0.6
1,883,844 - Dshi_1809 0.17 -1.1
1,883,887 - Dshi_1809 0.18 -0.5
1,883,916 + Dshi_1809 0.19 +0.1
1,884,037 - Dshi_1809 0.24 -0.3
1,884,188 - Dshi_1809 0.29 -0.1

Or see this region's nucleotide sequence