Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3800

Experiment: KB with Flavone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3799 and Psyr_3800 overlap by 4 nucleotidesPsyr_3800 and Psyr_3801 are separated by 106 nucleotides Psyr_3799: Psyr_3799 - conserved hypothetical protein, at 4,515,853 to 4,516,881 _3799 Psyr_3800: Psyr_3800 - Major facilitator superfamily, at 4,516,878 to 4,518,140 _3800 Psyr_3801: Psyr_3801 - transcriptional regulator, LysR family, at 4,518,247 to 4,519,140 _3801 Position (kb) 4516 4517 4518 4519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4515.980 kb on + strand, within Psyr_3799at 4515.981 kb on - strand, within Psyr_3799at 4516.178 kb on + strand, within Psyr_3799at 4516.222 kb on + strand, within Psyr_3799at 4516.238 kb on + strand, within Psyr_3799at 4516.238 kb on + strand, within Psyr_3799at 4516.238 kb on + strand, within Psyr_3799at 4516.239 kb on - strand, within Psyr_3799at 4516.246 kb on - strand, within Psyr_3799at 4516.259 kb on + strand, within Psyr_3799at 4516.260 kb on - strand, within Psyr_3799at 4516.260 kb on - strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.542 kb on + strand, within Psyr_3799at 4516.543 kb on - strand, within Psyr_3799at 4516.543 kb on - strand, within Psyr_3799at 4516.543 kb on - strand, within Psyr_3799at 4516.543 kb on - strand, within Psyr_3799at 4516.625 kb on + strand, within Psyr_3799at 4516.626 kb on - strand, within Psyr_3799at 4516.626 kb on - strand, within Psyr_3799at 4516.690 kb on - strand, within Psyr_3799at 4516.690 kb on - strand, within Psyr_3799at 4516.714 kb on + strand, within Psyr_3799at 4516.716 kb on + strand, within Psyr_3799at 4516.716 kb on + strand, within Psyr_3799at 4516.717 kb on - strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.746 kb on - strand, within Psyr_3799at 4516.793 kb on + strandat 4516.838 kb on + strandat 4516.838 kb on + strandat 4516.838 kb on + strandat 4516.839 kb on - strandat 4516.839 kb on - strandat 4516.849 kb on + strandat 4516.849 kb on + strandat 4516.850 kb on - strandat 4516.850 kb on - strandat 4516.850 kb on - strandat 4516.869 kb on + strandat 4516.889 kb on + strandat 4516.889 kb on + strandat 4516.890 kb on - strandat 4516.890 kb on - strandat 4516.890 kb on - strandat 4516.916 kb on + strandat 4517.001 kb on + strandat 4517.001 kb on + strandat 4517.002 kb on - strandat 4517.296 kb on + strand, within Psyr_3800at 4517.296 kb on + strand, within Psyr_3800at 4517.297 kb on - strand, within Psyr_3800at 4517.297 kb on - strand, within Psyr_3800at 4517.297 kb on - strand, within Psyr_3800at 4517.329 kb on + strand, within Psyr_3800at 4517.329 kb on + strand, within Psyr_3800at 4517.329 kb on + strand, within Psyr_3800at 4517.329 kb on + strand, within Psyr_3800at 4517.330 kb on - strand, within Psyr_3800at 4517.330 kb on - strand, within Psyr_3800at 4517.330 kb on - strand, within Psyr_3800at 4517.425 kb on + strand, within Psyr_3800at 4517.425 kb on + strand, within Psyr_3800at 4517.426 kb on - strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.630 kb on - strand, within Psyr_3800at 4517.630 kb on - strand, within Psyr_3800at 4517.630 kb on - strand, within Psyr_3800at 4518.098 kb on + strandat 4518.098 kb on + strandat 4518.098 kb on + strandat 4518.098 kb on + strandat 4518.098 kb on + strandat 4518.098 kb on + strandat 4518.098 kb on + strandat 4518.099 kb on - strandat 4518.099 kb on - strandat 4518.103 kb on - strandat 4518.162 kb on - strandat 4518.169 kb on - strandat 4518.196 kb on + strandat 4518.196 kb on + strandat 4518.420 kb on - strand, within Psyr_3801at 4518.536 kb on - strand, within Psyr_3801at 4518.540 kb on + strand, within Psyr_3801at 4518.540 kb on + strand, within Psyr_3801at 4518.541 kb on - strand, within Psyr_3801at 4518.651 kb on + strand, within Psyr_3801at 4518.652 kb on - strand, within Psyr_3801at 4518.652 kb on - strand, within Psyr_3801at 4518.750 kb on - strand, within Psyr_3801at 4518.750 kb on - strand, within Psyr_3801at 4518.767 kb on - strand, within Psyr_3801at 4518.896 kb on + strand, within Psyr_3801at 4518.896 kb on + strand, within Psyr_3801at 4518.973 kb on + strand, within Psyr_3801at 4518.973 kb on + strand, within Psyr_3801at 4518.973 kb on + strand, within Psyr_3801at 4518.973 kb on + strand, within Psyr_3801at 4518.973 kb on + strand, within Psyr_3801at 4518.974 kb on - strand, within Psyr_3801at 4518.974 kb on - strand, within Psyr_3801at 4519.049 kb on - strand, within Psyr_3801at 4519.069 kb on + strandat 4519.069 kb on + strandat 4519.070 kb on - strandat 4519.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml
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4,515,980 + Psyr_3799 0.12 +1.0
4,515,981 - Psyr_3799 0.12 -1.9
4,516,178 + Psyr_3799 0.32 -0.1
4,516,222 + Psyr_3799 0.36 +0.3
4,516,238 + Psyr_3799 0.37 +0.2
4,516,238 + Psyr_3799 0.37 -1.1
4,516,238 + Psyr_3799 0.37 -1.6
4,516,239 - Psyr_3799 0.38 -0.6
4,516,246 - Psyr_3799 0.38 -2.7
4,516,259 + Psyr_3799 0.39 +0.2
4,516,260 - Psyr_3799 0.40 +0.5
4,516,260 - Psyr_3799 0.40 +0.4
4,516,361 + Psyr_3799 0.49 -1.5
4,516,361 + Psyr_3799 0.49 -0.2
4,516,361 + Psyr_3799 0.49 -1.7
4,516,361 + Psyr_3799 0.49 +0.2
4,516,361 + Psyr_3799 0.49 -0.9
4,516,361 + Psyr_3799 0.49 +1.4
4,516,361 + Psyr_3799 0.49 -0.4
4,516,361 + Psyr_3799 0.49 -0.5
4,516,361 + Psyr_3799 0.49 -0.3
4,516,361 + Psyr_3799 0.49 -1.1
4,516,361 + Psyr_3799 0.49 -0.1
4,516,361 + Psyr_3799 0.49 +0.6
4,516,361 + Psyr_3799 0.49 -1.8
4,516,361 + Psyr_3799 0.49 -0.5
4,516,361 + Psyr_3799 0.49 +2.3
4,516,361 + Psyr_3799 0.49 +0.7
4,516,361 + Psyr_3799 0.49 +0.2
4,516,361 + Psyr_3799 0.49 -0.9
4,516,361 + Psyr_3799 0.49 -0.4
4,516,362 - Psyr_3799 0.49 -1.5
4,516,362 - Psyr_3799 0.49 +0.8
4,516,362 - Psyr_3799 0.49 -0.4
4,516,362 - Psyr_3799 0.49 +1.0
4,516,362 - Psyr_3799 0.49 -3.1
4,516,362 - Psyr_3799 0.49 +1.4
4,516,362 - Psyr_3799 0.49 +1.2
4,516,362 - Psyr_3799 0.49 -1.0
4,516,362 - Psyr_3799 0.49 -0.1
4,516,362 - Psyr_3799 0.49 +1.1
4,516,362 - Psyr_3799 0.49 -0.5
4,516,362 - Psyr_3799 0.49 +0.6
4,516,362 - Psyr_3799 0.49 -1.4
4,516,362 - Psyr_3799 0.49 -1.2
4,516,362 - Psyr_3799 0.49 -1.1
4,516,362 - Psyr_3799 0.49 +0.1
4,516,362 - Psyr_3799 0.49 -0.8
4,516,542 + Psyr_3799 0.67 +1.1
4,516,543 - Psyr_3799 0.67 +0.2
4,516,543 - Psyr_3799 0.67 +0.7
4,516,543 - Psyr_3799 0.67 -0.1
4,516,543 - Psyr_3799 0.67 +1.4
4,516,625 + Psyr_3799 0.75 +0.3
4,516,626 - Psyr_3799 0.75 -2.0
4,516,626 - Psyr_3799 0.75 +0.4
4,516,690 - Psyr_3799 0.81 +0.9
4,516,690 - Psyr_3799 0.81 +0.8
4,516,714 + Psyr_3799 0.84 -0.1
4,516,716 + Psyr_3799 0.84 -0.1
4,516,716 + Psyr_3799 0.84 +0.0
4,516,717 - Psyr_3799 0.84 +0.8
4,516,745 + Psyr_3799 0.87 +0.1
4,516,745 + Psyr_3799 0.87 -0.5
4,516,745 + Psyr_3799 0.87 +1.7
4,516,745 + Psyr_3799 0.87 +0.7
4,516,745 + Psyr_3799 0.87 -1.8
4,516,746 - Psyr_3799 0.87 +2.4
4,516,793 + +0.3
4,516,838 + +1.1
4,516,838 + +0.7
4,516,838 + +0.1
4,516,839 - +0.4
4,516,839 - -0.3
4,516,849 + -0.8
4,516,849 + +1.1
4,516,850 - -1.0
4,516,850 - -0.2
4,516,850 - +0.5
4,516,869 + -0.4
4,516,889 + +0.6
4,516,889 + -1.0
4,516,890 - -1.1
4,516,890 - -0.5
4,516,890 - +2.2
4,516,916 + -1.4
4,517,001 + -1.0
4,517,001 + -1.2
4,517,002 - -1.3
4,517,296 + Psyr_3800 0.33 -1.2
4,517,296 + Psyr_3800 0.33 +0.5
4,517,297 - Psyr_3800 0.33 -1.1
4,517,297 - Psyr_3800 0.33 -0.4
4,517,297 - Psyr_3800 0.33 -0.3
4,517,329 + Psyr_3800 0.36 -0.1
4,517,329 + Psyr_3800 0.36 +0.7
4,517,329 + Psyr_3800 0.36 +0.9
4,517,329 + Psyr_3800 0.36 -0.4
4,517,330 - Psyr_3800 0.36 -2.4
4,517,330 - Psyr_3800 0.36 -0.3
4,517,330 - Psyr_3800 0.36 +0.1
4,517,425 + Psyr_3800 0.43 -0.1
4,517,425 + Psyr_3800 0.43 -1.6
4,517,426 - Psyr_3800 0.43 -1.7
4,517,629 + Psyr_3800 0.59 -0.4
4,517,629 + Psyr_3800 0.59 +0.4
4,517,629 + Psyr_3800 0.59 +0.5
4,517,629 + Psyr_3800 0.59 +0.4
4,517,629 + Psyr_3800 0.59 -2.0
4,517,629 + Psyr_3800 0.59 +1.2
4,517,630 - Psyr_3800 0.60 +0.3
4,517,630 - Psyr_3800 0.60 +0.7
4,517,630 - Psyr_3800 0.60 -0.3
4,518,098 + -0.8
4,518,098 + -0.7
4,518,098 + -1.5
4,518,098 + -2.1
4,518,098 + -2.5
4,518,098 + -2.2
4,518,098 + -2.5
4,518,099 - +0.4
4,518,099 - +0.5
4,518,103 - +1.1
4,518,162 - -0.1
4,518,169 - +0.5
4,518,196 + +0.5
4,518,196 + -0.8
4,518,420 - Psyr_3801 0.19 +0.2
4,518,536 - Psyr_3801 0.32 +0.4
4,518,540 + Psyr_3801 0.33 -0.7
4,518,540 + Psyr_3801 0.33 +1.8
4,518,541 - Psyr_3801 0.33 -1.2
4,518,651 + Psyr_3801 0.45 +0.5
4,518,652 - Psyr_3801 0.45 +0.5
4,518,652 - Psyr_3801 0.45 -0.4
4,518,750 - Psyr_3801 0.56 -1.3
4,518,750 - Psyr_3801 0.56 -0.0
4,518,767 - Psyr_3801 0.58 -1.0
4,518,896 + Psyr_3801 0.73 +0.8
4,518,896 + Psyr_3801 0.73 -0.4
4,518,973 + Psyr_3801 0.81 +2.2
4,518,973 + Psyr_3801 0.81 +0.9
4,518,973 + Psyr_3801 0.81 -1.8
4,518,973 + Psyr_3801 0.81 +0.8
4,518,973 + Psyr_3801 0.81 -1.7
4,518,974 - Psyr_3801 0.81 -0.6
4,518,974 - Psyr_3801 0.81 +0.1
4,519,049 - Psyr_3801 0.90 +0.8
4,519,069 + -1.1
4,519,069 + -0.4
4,519,070 - -0.0
4,519,070 - -1.5

Or see this region's nucleotide sequence