Experiment: KB with Flavone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3702 and Psyr_3703 overlap by 4 nucleotides Psyr_3703 and Psyr_3704 are separated by 99 nucleotides Psyr_3704 and Psyr_3705 are separated by 6 nucleotides
Psyr_3702: Psyr_3702 - Arsenate reductase, at 4,389,992 to 4,390,345
_3702
Psyr_3703: Psyr_3703 - Flavodoxin/nitric oxide synthase, at 4,390,342 to 4,390,947
_3703
Psyr_3704: Psyr_3704 - conserved hypothetical protein, at 4,391,047 to 4,391,718
_3704
Psyr_3705: Psyr_3705 - conserved hypothetical protein, at 4,391,725 to 4,392,549
_3705
Position (kb) 4391
4392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4390.187 kb on + strand, within Psyr_3702 at 4390.187 kb on + strand, within Psyr_3702 at 4390.187 kb on + strand, within Psyr_3702 at 4390.188 kb on - strand, within Psyr_3702 at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.369 kb on + strand at 4390.369 kb on + strand at 4390.370 kb on - strand at 4390.370 kb on - strand at 4390.372 kb on + strand at 4390.373 kb on - strand at 4390.522 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.677 kb on + strand, within Psyr_3703 at 4391.056 kb on + strand at 4391.056 kb on + strand at 4391.074 kb on + strand at 4391.074 kb on + strand at 4391.178 kb on + strand, within Psyr_3704 at 4391.179 kb on - strand, within Psyr_3704 at 4391.179 kb on - strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.731 kb on - strand at 4391.975 kb on + strand, within Psyr_3705 at 4391.976 kb on - strand, within Psyr_3705 at 4391.976 kb on - strand, within Psyr_3705 at 4392.002 kb on + strand, within Psyr_3705 at 4392.170 kb on + strand, within Psyr_3705 at 4392.170 kb on + strand, within Psyr_3705 at 4392.171 kb on - strand, within Psyr_3705 at 4392.171 kb on - strand, within Psyr_3705 at 4392.171 kb on - strand, within Psyr_3705 at 4392.171 kb on - strand, within Psyr_3705 at 4392.248 kb on + strand, within Psyr_3705 at 4392.248 kb on + strand, within Psyr_3705 at 4392.248 kb on + strand at 4392.249 kb on - strand, within Psyr_3705 at 4392.249 kb on - strand, within Psyr_3705 at 4392.249 kb on - strand, within Psyr_3705 at 4392.249 kb on - strand, within Psyr_3705 at 4392.297 kb on - strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.551 kb on + strand at 4392.551 kb on + strand at 4392.552 kb on - strand at 4392.552 kb on - strand at 4392.552 kb on - strand at 4392.552 kb on - strand at 4392.552 kb on - strand at 4392.617 kb on + strand at 4392.618 kb on - strand at 4392.618 kb on - strand at 4392.621 kb on + strand at 4392.621 kb on + strand at 4392.621 kb on + strand at 4392.621 kb on + strand at 4392.621 kb on + strand at 4392.622 kb on - strand at 4392.622 kb on - strand at 4392.622 kb on - strand at 4392.622 kb on - strand at 4392.622 kb on - strand at 4392.701 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml remove 4,390,187 + Psyr_3702 0.55 +0.0 4,390,187 + Psyr_3702 0.55 +0.3 4,390,187 + Psyr_3702 0.55 -0.5 4,390,188 - Psyr_3702 0.55 -0.2 4,390,354 + +0.6 4,390,354 + -1.6 4,390,354 + +0.1 4,390,354 + -1.1 4,390,354 + -1.8 4,390,354 + -0.7 4,390,354 + -0.5 4,390,354 + +0.7 4,390,354 + +0.4 4,390,355 - -0.1 4,390,355 - +0.0 4,390,355 - +2.3 4,390,355 - -1.3 4,390,355 - -0.7 4,390,369 + -0.7 4,390,369 + +1.2 4,390,370 - -1.2 4,390,370 - +2.1 4,390,372 + +0.5 4,390,373 - -0.5 4,390,522 + Psyr_3703 0.30 +0.2 4,390,609 + Psyr_3703 0.44 -2.4 4,390,609 + Psyr_3703 0.44 -0.2 4,390,609 + Psyr_3703 0.44 -0.1 4,390,610 - Psyr_3703 0.44 +1.1 4,390,610 - Psyr_3703 0.44 -1.0 4,390,610 - Psyr_3703 0.44 +2.0 4,390,677 + Psyr_3703 0.55 +0.6 4,391,056 + +1.9 4,391,056 + +0.6 4,391,074 + +0.5 4,391,074 + -3.4 4,391,178 + Psyr_3704 0.19 -2.0 4,391,179 - Psyr_3704 0.20 -0.2 4,391,179 - Psyr_3704 0.20 +1.0 4,391,467 + Psyr_3704 0.62 +0.3 4,391,467 + Psyr_3704 0.62 +0.2 4,391,467 + Psyr_3704 0.62 +0.9 4,391,467 + Psyr_3704 0.62 +1.0 4,391,467 + Psyr_3704 0.62 -0.4 4,391,467 + Psyr_3704 0.62 +0.1 4,391,468 - Psyr_3704 0.63 +0.9 4,391,468 - Psyr_3704 0.63 +1.2 4,391,468 - Psyr_3704 0.63 +0.4 4,391,468 - Psyr_3704 0.63 -0.4 4,391,468 - Psyr_3704 0.63 +0.9 4,391,731 - -1.1 4,391,975 + Psyr_3705 0.30 -0.9 4,391,976 - Psyr_3705 0.30 +3.1 4,391,976 - Psyr_3705 0.30 -0.7 4,392,002 + Psyr_3705 0.34 +0.1 4,392,170 + Psyr_3705 0.54 +1.8 4,392,170 + Psyr_3705 0.54 -0.2 4,392,171 - Psyr_3705 0.54 +1.5 4,392,171 - Psyr_3705 0.54 -0.9 4,392,171 - Psyr_3705 0.54 -0.5 4,392,171 - Psyr_3705 0.54 -1.2 4,392,248 + Psyr_3705 0.63 +0.5 4,392,248 + Psyr_3705 0.63 +0.2 4,392,248 + -1.2 4,392,249 - Psyr_3705 0.64 -0.1 4,392,249 - Psyr_3705 0.64 -1.8 4,392,249 - Psyr_3705 0.64 +0.2 4,392,249 - Psyr_3705 0.64 +0.4 4,392,297 - Psyr_3705 0.69 -1.5 4,392,413 + Psyr_3705 0.83 +0.0 4,392,413 + Psyr_3705 0.83 +0.1 4,392,413 + Psyr_3705 0.83 +0.6 4,392,413 + Psyr_3705 0.83 -0.8 4,392,413 + Psyr_3705 0.83 -0.5 4,392,413 + Psyr_3705 0.83 -1.6 4,392,414 - Psyr_3705 0.84 +0.3 4,392,414 - Psyr_3705 0.84 -0.8 4,392,414 - Psyr_3705 0.84 -0.1 4,392,414 - Psyr_3705 0.84 +0.3 4,392,414 - Psyr_3705 0.84 -0.3 4,392,414 - Psyr_3705 0.84 +0.1 4,392,414 - Psyr_3705 0.84 -0.4 4,392,551 + +1.3 4,392,551 + -0.6 4,392,552 - -0.6 4,392,552 - -0.1 4,392,552 - -0.8 4,392,552 - +0.6 4,392,552 - -0.6 4,392,617 + +0.4 4,392,618 - -0.8 4,392,618 - +0.8 4,392,621 + -0.2 4,392,621 + -0.0 4,392,621 + +1.1 4,392,621 + -1.9 4,392,621 + -0.2 4,392,622 - +0.3 4,392,622 - -1.6 4,392,622 - +0.2 4,392,622 - +0.4 4,392,622 - +0.5 4,392,701 - -1.4 4,392,717 - -1.7 4,392,717 - -2.2 4,392,717 - -0.6 4,392,717 - -0.6 4,392,717 - +0.4 4,392,717 - -0.6
Or see this region's nucleotide sequence