Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3365

Experiment: KB with Flavone 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3364 and Psyr_3365 overlap by 12 nucleotidesPsyr_3365 and Psyr_3366 are separated by 21 nucleotidesPsyr_3366 and Psyr_3367 are separated by 252 nucleotides Psyr_3364: Psyr_3364 - Beta-lactamase, at 4,022,628 to 4,023,785 _3364 Psyr_3365: Psyr_3365 - Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase, at 4,023,774 to 4,024,928 _3365 Psyr_3366: Psyr_3366 - DNA-3-methyladenine glycosylase II, at 4,024,950 to 4,025,615 _3366 Psyr_3367: Psyr_3367 - Iron permease FTR1, at 4,025,868 to 4,026,722 _3367 Position (kb) 4023 4024 4025Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.809 kb on - strand, within Psyr_3364at 4022.809 kb on - strand, within Psyr_3364at 4022.809 kb on - strand, within Psyr_3364at 4022.815 kb on - strand, within Psyr_3364at 4022.815 kb on - strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.963 kb on + strand, within Psyr_3364at 4022.964 kb on - strand, within Psyr_3364at 4022.964 kb on - strand, within Psyr_3364at 4022.964 kb on - strand, within Psyr_3364at 4023.087 kb on + strand, within Psyr_3364at 4023.111 kb on + strand, within Psyr_3364at 4023.111 kb on + strand, within Psyr_3364at 4023.112 kb on - strand, within Psyr_3364at 4023.135 kb on + strand, within Psyr_3364at 4023.135 kb on + strand, within Psyr_3364at 4023.136 kb on - strand, within Psyr_3364at 4023.242 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.251 kb on + strand, within Psyr_3364at 4023.251 kb on + strand, within Psyr_3364at 4023.251 kb on + strand, within Psyr_3364at 4023.252 kb on - strand, within Psyr_3364at 4023.252 kb on - strand, within Psyr_3364at 4023.259 kb on + strand, within Psyr_3364at 4023.260 kb on - strand, within Psyr_3364at 4023.283 kb on - strand, within Psyr_3364at 4023.383 kb on - strand, within Psyr_3364at 4023.462 kb on + strand, within Psyr_3364at 4023.507 kb on + strand, within Psyr_3364at 4023.657 kb on + strand, within Psyr_3364at 4023.658 kb on - strand, within Psyr_3364at 4023.963 kb on + strand, within Psyr_3365at 4023.963 kb on + strand, within Psyr_3365at 4023.963 kb on + strand, within Psyr_3365at 4023.964 kb on - strand, within Psyr_3365at 4023.964 kb on - strand, within Psyr_3365at 4023.983 kb on + strand, within Psyr_3365at 4023.985 kb on + strand, within Psyr_3365at 4023.985 kb on + strand, within Psyr_3365at 4023.985 kb on + strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4024.226 kb on + strand, within Psyr_3365at 4024.226 kb on + strand, within Psyr_3365at 4024.390 kb on + strand, within Psyr_3365at 4024.390 kb on + strand, within Psyr_3365at 4024.390 kb on + strand, within Psyr_3365at 4024.390 kb on + strand, within Psyr_3365at 4024.391 kb on - strand, within Psyr_3365at 4024.411 kb on - strand, within Psyr_3365at 4024.411 kb on - strand, within Psyr_3365at 4024.411 kb on - strand, within Psyr_3365at 4024.462 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.772 kb on - strand, within Psyr_3365at 4025.003 kb on - strandat 4025.003 kb on - strandat 4025.003 kb on - strandat 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.156 kb on - strand, within Psyr_3366at 4025.156 kb on - strand, within Psyr_3366at 4025.156 kb on - strand, within Psyr_3366at 4025.156 kb on - strand, within Psyr_3366at 4025.550 kb on + strandat 4025.649 kb on + strandat 4025.650 kb on - strandat 4025.650 kb on - strandat 4025.650 kb on - strandat 4025.798 kb on - strandat 4025.820 kb on + strandat 4025.821 kb on - strandat 4025.867 kb on + strandat 4025.867 kb on + strandat 4025.867 kb on + strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.918 kb on + strandat 4025.918 kb on + strandat 4025.918 kb on + strandat 4025.918 kb on + strandat 4025.918 kb on + strandat 4025.919 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml
remove
4,022,808 + Psyr_3364 0.16 +0.1
4,022,808 + Psyr_3364 0.16 -1.2
4,022,808 + Psyr_3364 0.16 +2.0
4,022,809 - Psyr_3364 0.16 -0.2
4,022,809 - Psyr_3364 0.16 +0.6
4,022,809 - Psyr_3364 0.16 +1.0
4,022,815 - Psyr_3364 0.16 -0.9
4,022,815 - Psyr_3364 0.16 -0.2
4,022,961 + Psyr_3364 0.29 +0.2
4,022,961 + Psyr_3364 0.29 +0.5
4,022,961 + Psyr_3364 0.29 +1.6
4,022,961 + Psyr_3364 0.29 -0.1
4,022,961 + Psyr_3364 0.29 +1.2
4,022,961 + Psyr_3364 0.29 +1.0
4,022,961 + Psyr_3364 0.29 +0.0
4,022,961 + Psyr_3364 0.29 -0.2
4,022,961 + Psyr_3364 0.29 +1.4
4,022,961 + Psyr_3364 0.29 -1.0
4,022,961 + Psyr_3364 0.29 +0.2
4,022,961 + Psyr_3364 0.29 +0.6
4,022,961 + Psyr_3364 0.29 -0.4
4,022,961 + Psyr_3364 0.29 -0.1
4,022,961 + Psyr_3364 0.29 -0.8
4,022,962 - Psyr_3364 0.29 +1.5
4,022,962 - Psyr_3364 0.29 -0.2
4,022,962 - Psyr_3364 0.29 +0.6
4,022,962 - Psyr_3364 0.29 +0.2
4,022,962 - Psyr_3364 0.29 +1.4
4,022,962 - Psyr_3364 0.29 +0.4
4,022,962 - Psyr_3364 0.29 -0.4
4,022,962 - Psyr_3364 0.29 +1.3
4,022,962 - Psyr_3364 0.29 +2.2
4,022,962 - Psyr_3364 0.29 -0.7
4,022,962 - Psyr_3364 0.29 -0.7
4,022,962 - Psyr_3364 0.29 +1.2
4,022,962 - Psyr_3364 0.29 -0.1
4,022,962 - Psyr_3364 0.29 +1.2
4,022,962 - Psyr_3364 0.29 +1.3
4,022,962 - Psyr_3364 0.29 +1.6
4,022,962 - Psyr_3364 0.29 -0.4
4,022,962 - Psyr_3364 0.29 -0.7
4,022,963 + Psyr_3364 0.29 +0.4
4,022,964 - Psyr_3364 0.29 +0.8
4,022,964 - Psyr_3364 0.29 -0.4
4,022,964 - Psyr_3364 0.29 -1.2
4,023,087 + Psyr_3364 0.40 -0.4
4,023,111 + Psyr_3364 0.42 +1.1
4,023,111 + Psyr_3364 0.42 +1.6
4,023,112 - Psyr_3364 0.42 +0.8
4,023,135 + Psyr_3364 0.44 +1.0
4,023,135 + Psyr_3364 0.44 -0.8
4,023,136 - Psyr_3364 0.44 +1.1
4,023,242 + Psyr_3364 0.53 -1.0
4,023,249 + Psyr_3364 0.54 -0.3
4,023,249 + Psyr_3364 0.54 +0.4
4,023,249 + Psyr_3364 0.54 +0.0
4,023,249 + Psyr_3364 0.54 -1.2
4,023,249 + Psyr_3364 0.54 -2.2
4,023,249 + Psyr_3364 0.54 +0.6
4,023,249 + Psyr_3364 0.54 -0.2
4,023,249 + Psyr_3364 0.54 -1.0
4,023,249 + Psyr_3364 0.54 +1.0
4,023,249 + Psyr_3364 0.54 -2.0
4,023,249 + Psyr_3364 0.54 +0.8
4,023,249 + Psyr_3364 0.54 -0.4
4,023,249 + Psyr_3364 0.54 -1.2
4,023,249 + Psyr_3364 0.54 +0.0
4,023,249 + Psyr_3364 0.54 -0.4
4,023,249 + Psyr_3364 0.54 -1.0
4,023,250 - Psyr_3364 0.54 -0.1
4,023,250 - Psyr_3364 0.54 -0.0
4,023,250 - Psyr_3364 0.54 -1.0
4,023,250 - Psyr_3364 0.54 -1.4
4,023,250 - Psyr_3364 0.54 -0.6
4,023,250 - Psyr_3364 0.54 -1.2
4,023,250 - Psyr_3364 0.54 +0.6
4,023,250 - Psyr_3364 0.54 -0.0
4,023,250 - Psyr_3364 0.54 +0.5
4,023,250 - Psyr_3364 0.54 -0.1
4,023,250 - Psyr_3364 0.54 +1.8
4,023,250 - Psyr_3364 0.54 -0.6
4,023,250 - Psyr_3364 0.54 +0.5
4,023,250 - Psyr_3364 0.54 -0.5
4,023,250 - Psyr_3364 0.54 +0.2
4,023,250 - Psyr_3364 0.54 +1.5
4,023,250 - Psyr_3364 0.54 +0.5
4,023,250 - Psyr_3364 0.54 +0.0
4,023,251 + Psyr_3364 0.54 +1.8
4,023,251 + Psyr_3364 0.54 +0.2
4,023,251 + Psyr_3364 0.54 -0.9
4,023,252 - Psyr_3364 0.54 -0.1
4,023,252 - Psyr_3364 0.54 -0.4
4,023,259 + Psyr_3364 0.54 +0.2
4,023,260 - Psyr_3364 0.55 -0.1
4,023,283 - Psyr_3364 0.57 -0.2
4,023,383 - Psyr_3364 0.65 +1.9
4,023,462 + Psyr_3364 0.72 -0.4
4,023,507 + Psyr_3364 0.76 -1.1
4,023,657 + Psyr_3364 0.89 +3.6
4,023,658 - Psyr_3364 0.89 +0.8
4,023,963 + Psyr_3365 0.16 +0.1
4,023,963 + Psyr_3365 0.16 +1.2
4,023,963 + Psyr_3365 0.16 -1.3
4,023,964 - Psyr_3365 0.16 -0.2
4,023,964 - Psyr_3365 0.16 +1.4
4,023,983 + Psyr_3365 0.18 -0.2
4,023,985 + Psyr_3365 0.18 +1.4
4,023,985 + Psyr_3365 0.18 +0.6
4,023,985 + Psyr_3365 0.18 +0.6
4,023,986 - Psyr_3365 0.18 +1.2
4,023,986 - Psyr_3365 0.18 +0.0
4,023,986 - Psyr_3365 0.18 +0.4
4,023,986 - Psyr_3365 0.18 +1.0
4,023,986 - Psyr_3365 0.18 +1.6
4,023,986 - Psyr_3365 0.18 -0.1
4,023,986 - Psyr_3365 0.18 +2.6
4,023,986 - Psyr_3365 0.18 +0.8
4,023,986 - Psyr_3365 0.18 +0.6
4,023,986 - Psyr_3365 0.18 -0.9
4,024,226 + Psyr_3365 0.39 -0.2
4,024,226 + Psyr_3365 0.39 -0.2
4,024,390 + Psyr_3365 0.53 +2.0
4,024,390 + Psyr_3365 0.53 +1.3
4,024,390 + Psyr_3365 0.53 -0.5
4,024,390 + Psyr_3365 0.53 -0.7
4,024,391 - Psyr_3365 0.53 +1.3
4,024,411 - Psyr_3365 0.55 -0.8
4,024,411 - Psyr_3365 0.55 +1.6
4,024,411 - Psyr_3365 0.55 +1.2
4,024,462 + Psyr_3365 0.60 +1.2
4,024,747 + Psyr_3365 0.84 +0.0
4,024,747 + Psyr_3365 0.84 -0.9
4,024,747 + Psyr_3365 0.84 +0.5
4,024,747 + Psyr_3365 0.84 -0.6
4,024,747 + Psyr_3365 0.84 -1.3
4,024,747 + Psyr_3365 0.84 +0.3
4,024,747 + Psyr_3365 0.84 -0.8
4,024,748 - Psyr_3365 0.84 +1.9
4,024,748 - Psyr_3365 0.84 +0.9
4,024,748 - Psyr_3365 0.84 -0.2
4,024,748 - Psyr_3365 0.84 +0.1
4,024,748 - Psyr_3365 0.84 +0.9
4,024,748 - Psyr_3365 0.84 +0.6
4,024,748 - Psyr_3365 0.84 -1.4
4,024,772 - Psyr_3365 0.86 -0.0
4,025,003 - -0.7
4,025,003 - +1.9
4,025,003 - +1.1
4,025,086 + Psyr_3366 0.20 -0.6
4,025,086 + Psyr_3366 0.20 +0.0
4,025,086 + Psyr_3366 0.20 -0.9
4,025,086 + Psyr_3366 0.20 -2.5
4,025,086 + Psyr_3366 0.20 +1.2
4,025,086 + Psyr_3366 0.20 -0.0
4,025,086 + Psyr_3366 0.20 -2.1
4,025,086 + Psyr_3366 0.20 +0.3
4,025,087 - Psyr_3366 0.21 +0.6
4,025,087 - Psyr_3366 0.21 +0.6
4,025,087 - Psyr_3366 0.21 +0.9
4,025,087 - Psyr_3366 0.21 -0.0
4,025,087 - Psyr_3366 0.21 +0.3
4,025,087 - Psyr_3366 0.21 +1.6
4,025,156 - Psyr_3366 0.31 -0.5
4,025,156 - Psyr_3366 0.31 +0.8
4,025,156 - Psyr_3366 0.31 -0.1
4,025,156 - Psyr_3366 0.31 -0.2
4,025,550 + -1.1
4,025,649 + -1.4
4,025,650 - +0.5
4,025,650 - +0.0
4,025,650 - -1.0
4,025,798 - -0.8
4,025,820 + -1.0
4,025,821 - -0.2
4,025,867 + -0.2
4,025,867 + -0.2
4,025,867 + +0.3
4,025,868 - -0.2
4,025,868 - -0.4
4,025,868 - +0.6
4,025,868 - -1.8
4,025,868 - -0.1
4,025,868 - +0.1
4,025,868 - -2.0
4,025,918 + +1.0
4,025,918 + +0.9
4,025,918 + -2.0
4,025,918 + +0.2
4,025,918 + -1.4
4,025,919 - +0.2

Or see this region's nucleotide sequence