Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3313

Experiment: KB with Flavone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3312 and Psyr_3313 are separated by 129 nucleotidesPsyr_3313 and Psyr_3314 are separated by 65 nucleotides Psyr_3312: Psyr_3312 - transcriptional regulator, LysR family, at 3,964,004 to 3,964,957 _3312 Psyr_3313: Psyr_3313 - C4-dicarboxylate transporter/malic acid transport protein, at 3,965,087 to 3,966,247 _3313 Psyr_3314: Psyr_3314 - conserved hypothetical protein, at 3,966,313 to 3,967,245 _3314 Position (kb) 3965 3966 3967Strain fitness (log2 ratio) -2 -1 0 1 2at 3964.290 kb on - strand, within Psyr_3312at 3964.290 kb on - strand, within Psyr_3312at 3964.641 kb on + strand, within Psyr_3312at 3964.641 kb on + strand, within Psyr_3312at 3964.641 kb on + strand, within Psyr_3312at 3964.641 kb on + strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.660 kb on + strand, within Psyr_3312at 3964.898 kb on - strandat 3965.046 kb on - strandat 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.334 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3966.059 kb on + strand, within Psyr_3313at 3966.059 kb on + strand, within Psyr_3313at 3966.059 kb on + strand, within Psyr_3313at 3966.060 kb on - strand, within Psyr_3313at 3966.060 kb on - strand, within Psyr_3313at 3966.168 kb on + strandat 3966.169 kb on - strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.173 kb on - strandat 3966.173 kb on - strandat 3966.173 kb on - strandat 3966.261 kb on + strandat 3966.261 kb on + strandat 3966.262 kb on - strandat 3966.262 kb on - strandat 3966.262 kb on - strandat 3966.291 kb on - strandat 3966.392 kb on - strandat 3966.443 kb on - strand, within Psyr_3314at 3966.443 kb on - strand, within Psyr_3314at 3966.496 kb on + strand, within Psyr_3314at 3966.496 kb on + strand, within Psyr_3314at 3966.574 kb on + strand, within Psyr_3314at 3966.574 kb on + strand, within Psyr_3314at 3966.694 kb on + strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.939 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.021 kb on + strand, within Psyr_3314at 3967.022 kb on - strandat 3967.075 kb on + strand, within Psyr_3314at 3967.075 kb on + strand, within Psyr_3314at 3967.105 kb on + strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml
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3,964,290 - Psyr_3312 0.30 -0.6
3,964,290 - Psyr_3312 0.30 -1.5
3,964,641 + Psyr_3312 0.67 -0.3
3,964,641 + Psyr_3312 0.67 +0.3
3,964,641 + Psyr_3312 0.67 +0.2
3,964,641 + Psyr_3312 0.67 -0.7
3,964,642 - Psyr_3312 0.67 +0.4
3,964,660 + Psyr_3312 0.69 +0.3
3,964,898 - -0.6
3,965,046 - +0.6
3,965,315 + Psyr_3313 0.20 -0.3
3,965,315 + Psyr_3313 0.20 -0.6
3,965,315 + Psyr_3313 0.20 -1.7
3,965,315 + Psyr_3313 0.20 +0.8
3,965,315 + Psyr_3313 0.20 +0.2
3,965,315 + Psyr_3313 0.20 -1.0
3,965,316 - Psyr_3313 0.20 +0.6
3,965,316 - Psyr_3313 0.20 +0.4
3,965,316 - Psyr_3313 0.20 -0.0
3,965,316 - Psyr_3313 0.20 +1.2
3,965,316 - Psyr_3313 0.20 -0.7
3,965,316 - Psyr_3313 0.20 -0.3
3,965,316 - Psyr_3313 0.20 +2.2
3,965,316 - Psyr_3313 0.20 +0.1
3,965,334 + Psyr_3313 0.21 +0.5
3,965,693 + Psyr_3313 0.52 -1.4
3,965,693 + Psyr_3313 0.52 +1.1
3,965,693 + Psyr_3313 0.52 +1.3
3,965,693 + Psyr_3313 0.52 -0.4
3,965,693 + Psyr_3313 0.52 +0.2
3,965,693 + Psyr_3313 0.52 +0.6
3,965,694 - Psyr_3313 0.52 -0.6
3,965,694 - Psyr_3313 0.52 -0.3
3,965,694 - Psyr_3313 0.52 -0.9
3,965,694 - Psyr_3313 0.52 +0.4
3,965,694 - Psyr_3313 0.52 -0.3
3,965,694 - Psyr_3313 0.52 +0.4
3,965,694 - Psyr_3313 0.52 -0.6
3,965,697 + Psyr_3313 0.53 +2.0
3,965,697 + Psyr_3313 0.53 +0.0
3,965,697 + Psyr_3313 0.53 +0.3
3,965,697 + Psyr_3313 0.53 +1.0
3,965,697 + Psyr_3313 0.53 +1.9
3,965,697 + Psyr_3313 0.53 +2.1
3,965,697 + Psyr_3313 0.53 +0.2
3,965,697 + Psyr_3313 0.53 +0.5
3,965,697 + Psyr_3313 0.53 +1.6
3,965,697 + Psyr_3313 0.53 +1.9
3,966,059 + Psyr_3313 0.84 -0.6
3,966,059 + Psyr_3313 0.84 +0.9
3,966,059 + Psyr_3313 0.84 +0.6
3,966,060 - Psyr_3313 0.84 -0.3
3,966,060 - Psyr_3313 0.84 -0.1
3,966,168 + +0.7
3,966,169 - +0.0
3,966,172 + +0.9
3,966,172 + +0.9
3,966,172 + +0.5
3,966,172 + +1.0
3,966,172 + -0.6
3,966,172 + -0.2
3,966,172 + +0.8
3,966,172 + +0.3
3,966,173 - +0.1
3,966,173 - +1.4
3,966,173 - +0.6
3,966,261 + -0.3
3,966,261 + +0.5
3,966,262 - -1.4
3,966,262 - +0.1
3,966,262 - +0.2
3,966,291 - +0.0
3,966,392 - -0.3
3,966,443 - Psyr_3314 0.14 -0.6
3,966,443 - Psyr_3314 0.14 -1.0
3,966,496 + Psyr_3314 0.20 +0.6
3,966,496 + Psyr_3314 0.20 -0.2
3,966,574 + Psyr_3314 0.28 -0.4
3,966,574 + Psyr_3314 0.28 +1.0
3,966,694 + Psyr_3314 0.41 +0.4
3,966,902 - Psyr_3314 0.63 +0.3
3,966,902 - Psyr_3314 0.63 -0.3
3,966,902 - Psyr_3314 0.63 +2.4
3,966,902 - Psyr_3314 0.63 +0.3
3,966,939 + Psyr_3314 0.67 +0.2
3,967,018 + Psyr_3314 0.76 -1.0
3,967,018 + Psyr_3314 0.76 -0.6
3,967,018 + Psyr_3314 0.76 -1.4
3,967,018 + Psyr_3314 0.76 -0.6
3,967,018 + Psyr_3314 0.76 -1.0
3,967,018 + Psyr_3314 0.76 -0.2
3,967,019 - Psyr_3314 0.76 -1.1
3,967,019 - Psyr_3314 0.76 -1.1
3,967,019 - Psyr_3314 0.76 -1.0
3,967,019 - Psyr_3314 0.76 +0.0
3,967,019 - Psyr_3314 0.76 +1.2
3,967,021 + Psyr_3314 0.76 +0.0
3,967,022 - -2.2
3,967,075 + Psyr_3314 0.82 +0.3
3,967,075 + Psyr_3314 0.82 -0.4
3,967,105 + Psyr_3314 0.85 +0.4
3,967,106 - Psyr_3314 0.85 -0.6
3,967,106 - Psyr_3314 0.85 +0.6
3,967,106 - Psyr_3314 0.85 +1.3
3,967,111 + Psyr_3314 0.86 -1.5
3,967,111 + Psyr_3314 0.86 +0.7
3,967,111 + Psyr_3314 0.86 +1.0
3,967,111 + Psyr_3314 0.86 +0.0
3,967,111 + Psyr_3314 0.86 -1.3
3,967,111 + Psyr_3314 0.86 +0.1
3,967,111 + Psyr_3314 0.86 +0.5
3,967,112 - Psyr_3314 0.86 +1.4
3,967,112 - Psyr_3314 0.86 +0.3
3,967,112 - Psyr_3314 0.86 -1.0
3,967,112 - Psyr_3314 0.86 -0.7
3,967,112 - Psyr_3314 0.86 +1.4
3,967,112 - Psyr_3314 0.86 +1.1

Or see this region's nucleotide sequence