Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3224

Experiment: KB with Flavone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3222 and Psyr_3223 are separated by 3 nucleotidesPsyr_3223 and Psyr_3224 overlap by 11 nucleotidesPsyr_3224 and Psyr_3225 are separated by 0 nucleotides Psyr_3222: Psyr_3222 - Polysaccharide biosynthesis protein, at 3,859,580 to 3,861,094 _3222 Psyr_3223: Psyr_3223 - Glycosyl transferase, family 2, at 3,861,098 to 3,862,033 _3223 Psyr_3224: Psyr_3224 - Low molecular weight phosphotyrosine protein phosphatase, at 3,862,023 to 3,862,475 _3224 Psyr_3225: Psyr_3225 - Protein-tyrosine kinase, at 3,862,476 to 3,864,683 _3225 Position (kb) 3862 3863Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3861.066 kb on - strandat 3861.080 kb on - strandat 3861.088 kb on + strandat 3861.159 kb on + strandat 3861.160 kb on - strandat 3861.171 kb on - strandat 3861.171 kb on - strandat 3861.296 kb on + strand, within Psyr_3223at 3861.350 kb on + strand, within Psyr_3223at 3861.491 kb on + strand, within Psyr_3223at 3861.491 kb on + strand, within Psyr_3223at 3861.492 kb on - strand, within Psyr_3223at 3861.492 kb on - strand, within Psyr_3223at 3861.503 kb on + strand, within Psyr_3223at 3861.503 kb on + strand, within Psyr_3223at 3861.503 kb on + strand, within Psyr_3223at 3861.504 kb on - strand, within Psyr_3223at 3861.539 kb on + strand, within Psyr_3223at 3861.691 kb on + strand, within Psyr_3223at 3861.691 kb on + strand, within Psyr_3223at 3861.691 kb on + strand, within Psyr_3223at 3861.691 kb on + strand, within Psyr_3223at 3861.851 kb on + strand, within Psyr_3223at 3861.851 kb on + strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.852 kb on - strand, within Psyr_3223at 3861.854 kb on + strand, within Psyr_3223at 3861.855 kb on - strand, within Psyr_3223at 3861.855 kb on - strand, within Psyr_3223at 3861.881 kb on + strand, within Psyr_3223at 3861.881 kb on + strand, within Psyr_3223at 3861.887 kb on + strand, within Psyr_3223at 3862.031 kb on + strandat 3862.117 kb on + strand, within Psyr_3224at 3862.117 kb on + strand, within Psyr_3224at 3862.117 kb on + strand, within Psyr_3224at 3862.118 kb on - strand, within Psyr_3224at 3862.121 kb on + strand, within Psyr_3224at 3862.121 kb on + strand, within Psyr_3224at 3862.121 kb on + strand, within Psyr_3224at 3862.122 kb on - strand, within Psyr_3224at 3862.122 kb on - strand, within Psyr_3224at 3862.410 kb on + strand, within Psyr_3224at 3862.411 kb on - strand, within Psyr_3224at 3862.411 kb on - strand, within Psyr_3224at 3862.411 kb on - strand, within Psyr_3224at 3862.474 kb on - strandat 3862.638 kb on + strandat 3862.639 kb on - strandat 3862.639 kb on - strandat 3862.663 kb on + strandat 3862.802 kb on + strand, within Psyr_3225at 3862.803 kb on - strand, within Psyr_3225at 3862.842 kb on + strand, within Psyr_3225at 3862.895 kb on - strand, within Psyr_3225at 3862.895 kb on - strand, within Psyr_3225at 3863.019 kb on + strand, within Psyr_3225at 3863.020 kb on - strand, within Psyr_3225at 3863.099 kb on + strand, within Psyr_3225at 3863.169 kb on + strand, within Psyr_3225at 3863.169 kb on + strand, within Psyr_3225at 3863.169 kb on + strand, within Psyr_3225at 3863.220 kb on + strand, within Psyr_3225at 3863.220 kb on + strand, within Psyr_3225at 3863.220 kb on + strand, within Psyr_3225at 3863.220 kb on + strand, within Psyr_3225at 3863.221 kb on - strand, within Psyr_3225at 3863.221 kb on - strand, within Psyr_3225at 3863.221 kb on - strand, within Psyr_3225at 3863.221 kb on - strand, within Psyr_3225at 3863.286 kb on + strand, within Psyr_3225at 3863.286 kb on + strand, within Psyr_3225at 3863.286 kb on + strand, within Psyr_3225at 3863.287 kb on - strand, within Psyr_3225at 3863.290 kb on + strand, within Psyr_3225at 3863.290 kb on + strand, within Psyr_3225at 3863.290 kb on + strand, within Psyr_3225at 3863.290 kb on + strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.291 kb on - strand, within Psyr_3225at 3863.403 kb on - strand, within Psyr_3225

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml
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3,861,066 - +0.4
3,861,080 - +0.8
3,861,088 + -0.0
3,861,159 + -0.1
3,861,160 - +0.8
3,861,171 - +3.5
3,861,171 - -0.7
3,861,296 + Psyr_3223 0.21 -0.8
3,861,350 + Psyr_3223 0.27 -0.2
3,861,491 + Psyr_3223 0.42 -0.2
3,861,491 + Psyr_3223 0.42 +1.2
3,861,492 - Psyr_3223 0.42 +0.3
3,861,492 - Psyr_3223 0.42 -0.6
3,861,503 + Psyr_3223 0.43 -0.6
3,861,503 + Psyr_3223 0.43 -0.5
3,861,503 + Psyr_3223 0.43 -0.5
3,861,504 - Psyr_3223 0.43 +2.5
3,861,539 + Psyr_3223 0.47 +0.8
3,861,691 + Psyr_3223 0.63 +2.1
3,861,691 + Psyr_3223 0.63 +0.7
3,861,691 + Psyr_3223 0.63 -2.3
3,861,691 + Psyr_3223 0.63 -0.4
3,861,851 + Psyr_3223 0.80 +0.9
3,861,851 + Psyr_3223 0.80 +0.4
3,861,852 - Psyr_3223 0.81 -1.2
3,861,852 - Psyr_3223 0.81 +0.1
3,861,852 - Psyr_3223 0.81 -0.1
3,861,852 - Psyr_3223 0.81 +1.3
3,861,852 - Psyr_3223 0.81 +0.5
3,861,852 - Psyr_3223 0.81 +3.5
3,861,852 - Psyr_3223 0.81 -0.1
3,861,852 - Psyr_3223 0.81 -1.1
3,861,854 + Psyr_3223 0.81 +0.6
3,861,855 - Psyr_3223 0.81 -0.9
3,861,855 - Psyr_3223 0.81 +0.4
3,861,881 + Psyr_3223 0.84 +1.0
3,861,881 + Psyr_3223 0.84 +1.4
3,861,887 + Psyr_3223 0.84 +0.8
3,862,031 + +1.2
3,862,117 + Psyr_3224 0.21 -0.2
3,862,117 + Psyr_3224 0.21 +1.7
3,862,117 + Psyr_3224 0.21 -0.7
3,862,118 - Psyr_3224 0.21 +2.3
3,862,121 + Psyr_3224 0.22 -1.5
3,862,121 + Psyr_3224 0.22 -0.3
3,862,121 + Psyr_3224 0.22 -0.5
3,862,122 - Psyr_3224 0.22 -0.2
3,862,122 - Psyr_3224 0.22 +0.7
3,862,410 + Psyr_3224 0.85 -1.8
3,862,411 - Psyr_3224 0.86 -0.2
3,862,411 - Psyr_3224 0.86 +0.5
3,862,411 - Psyr_3224 0.86 -1.5
3,862,474 - +0.0
3,862,638 + -0.5
3,862,639 - +0.9
3,862,639 - -0.2
3,862,663 + +0.5
3,862,802 + Psyr_3225 0.15 +0.5
3,862,803 - Psyr_3225 0.15 +0.0
3,862,842 + Psyr_3225 0.17 -0.9
3,862,895 - Psyr_3225 0.19 +0.5
3,862,895 - Psyr_3225 0.19 -0.2
3,863,019 + Psyr_3225 0.25 +1.5
3,863,020 - Psyr_3225 0.25 +0.7
3,863,099 + Psyr_3225 0.28 +0.5
3,863,169 + Psyr_3225 0.31 -0.6
3,863,169 + Psyr_3225 0.31 +1.3
3,863,169 + Psyr_3225 0.31 +1.8
3,863,220 + Psyr_3225 0.34 +0.7
3,863,220 + Psyr_3225 0.34 -0.8
3,863,220 + Psyr_3225 0.34 -1.2
3,863,220 + Psyr_3225 0.34 +0.5
3,863,221 - Psyr_3225 0.34 +1.3
3,863,221 - Psyr_3225 0.34 -0.0
3,863,221 - Psyr_3225 0.34 -0.1
3,863,221 - Psyr_3225 0.34 +0.3
3,863,286 + Psyr_3225 0.37 -1.2
3,863,286 + Psyr_3225 0.37 -1.1
3,863,286 + Psyr_3225 0.37 -0.1
3,863,287 - Psyr_3225 0.37 +1.0
3,863,290 + Psyr_3225 0.37 +0.5
3,863,290 + Psyr_3225 0.37 -2.1
3,863,290 + Psyr_3225 0.37 -0.1
3,863,290 + Psyr_3225 0.37 -0.1
3,863,291 - Psyr_3225 0.37 +0.4
3,863,291 - Psyr_3225 0.37 +1.7
3,863,291 - Psyr_3225 0.37 -1.9
3,863,291 - Psyr_3225 0.37 +0.9
3,863,291 - Psyr_3225 0.37 -1.3
3,863,403 - Psyr_3225 0.42 -1.2

Or see this region's nucleotide sequence