Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2545

Experiment: KB with Flavone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2543 and Psyr_2544 overlap by 1 nucleotidesPsyr_2544 and Psyr_2545 are separated by 104 nucleotidesPsyr_2545 and Psyr_2546 are separated by 28 nucleotidesPsyr_2546 and Psyr_2547 are separated by 0 nucleotides Psyr_2543: Psyr_2543 - conserved hypothetical protein, at 2,959,044 to 2,959,571 _2543 Psyr_2544: Psyr_2544 - Alkylhydroperoxidase AhpD core:Uncharacterized peroxidase-related protein, at 2,959,571 to 2,960,158 _2544 Psyr_2545: Psyr_2545 - Metallophosphoesterase, at 2,960,263 to 2,961,060 _2545 Psyr_2546: Psyr_2546 - DMT superfamily multiple drug (quaternary ammonium compounds) efflux pump, at 2,961,089 to 2,961,448 _2546 Psyr_2547: Psyr_2547 - Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2, at 2,961,449 to 2,962,642 _2547 Position (kb) 2960 2961 2962Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2959.285 kb on - strand, within Psyr_2543at 2959.395 kb on - strand, within Psyr_2543at 2959.549 kb on + strandat 2959.716 kb on - strand, within Psyr_2544at 2959.719 kb on - strand, within Psyr_2544at 2959.785 kb on - strand, within Psyr_2544at 2959.828 kb on + strand, within Psyr_2544at 2959.828 kb on + strand, within Psyr_2544at 2959.828 kb on + strand, within Psyr_2544at 2959.859 kb on + strand, within Psyr_2544at 2960.043 kb on - strand, within Psyr_2544at 2960.224 kb on + strandat 2960.224 kb on + strandat 2960.225 kb on - strandat 2960.225 kb on - strandat 2960.225 kb on - strandat 2960.271 kb on - strandat 2960.294 kb on + strandat 2960.440 kb on + strand, within Psyr_2545at 2960.548 kb on + strand, within Psyr_2545at 2960.548 kb on + strand, within Psyr_2545at 2960.549 kb on - strand, within Psyr_2545at 2960.756 kb on - strand, within Psyr_2545at 2960.844 kb on + strand, within Psyr_2545at 2960.845 kb on - strand, within Psyr_2545at 2960.845 kb on - strand, within Psyr_2545at 2960.889 kb on + strand, within Psyr_2545at 2960.953 kb on + strand, within Psyr_2545at 2960.953 kb on + strand, within Psyr_2545at 2960.953 kb on + strand, within Psyr_2545at 2960.953 kb on + strand, within Psyr_2545at 2960.953 kb on + strand, within Psyr_2545at 2960.953 kb on + strand, within Psyr_2545at 2961.184 kb on - strand, within Psyr_2546at 2961.300 kb on + strand, within Psyr_2546at 2961.372 kb on - strand, within Psyr_2546at 2961.408 kb on + strand, within Psyr_2546at 2961.409 kb on - strand, within Psyr_2546at 2961.416 kb on + strandat 2961.417 kb on - strandat 2961.622 kb on + strand, within Psyr_2547at 2961.623 kb on - strand, within Psyr_2547at 2961.623 kb on - strand, within Psyr_2547at 2961.793 kb on - strand, within Psyr_2547at 2961.890 kb on - strand, within Psyr_2547at 2961.910 kb on - strand, within Psyr_2547at 2961.910 kb on - strand, within Psyr_2547

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml
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2,959,285 - Psyr_2543 0.46 +1.3
2,959,395 - Psyr_2543 0.66 -1.3
2,959,549 + -0.1
2,959,716 - Psyr_2544 0.25 -0.3
2,959,719 - Psyr_2544 0.25 +0.5
2,959,785 - Psyr_2544 0.36 +0.5
2,959,828 + Psyr_2544 0.44 +0.3
2,959,828 + Psyr_2544 0.44 -0.1
2,959,828 + Psyr_2544 0.44 -0.1
2,959,859 + Psyr_2544 0.49 +0.1
2,960,043 - Psyr_2544 0.80 -1.3
2,960,224 + +0.1
2,960,224 + -0.6
2,960,225 - +2.1
2,960,225 - -0.1
2,960,225 - -2.2
2,960,271 - -0.9
2,960,294 + +1.2
2,960,440 + Psyr_2545 0.22 -1.1
2,960,548 + Psyr_2545 0.36 -1.3
2,960,548 + Psyr_2545 0.36 +0.5
2,960,549 - Psyr_2545 0.36 +1.8
2,960,756 - Psyr_2545 0.62 -1.1
2,960,844 + Psyr_2545 0.73 +0.8
2,960,845 - Psyr_2545 0.73 +0.1
2,960,845 - Psyr_2545 0.73 +0.7
2,960,889 + Psyr_2545 0.78 -0.0
2,960,953 + Psyr_2545 0.86 -0.5
2,960,953 + Psyr_2545 0.86 -1.8
2,960,953 + Psyr_2545 0.86 +1.1
2,960,953 + Psyr_2545 0.86 +0.1
2,960,953 + Psyr_2545 0.86 +1.7
2,960,953 + Psyr_2545 0.86 +0.2
2,961,184 - Psyr_2546 0.26 +0.4
2,961,300 + Psyr_2546 0.59 +0.3
2,961,372 - Psyr_2546 0.79 -0.2
2,961,408 + Psyr_2546 0.89 -0.1
2,961,409 - Psyr_2546 0.89 +0.0
2,961,416 + +1.5
2,961,417 - -0.5
2,961,622 + Psyr_2547 0.14 -1.0
2,961,623 - Psyr_2547 0.15 +0.0
2,961,623 - Psyr_2547 0.15 +0.1
2,961,793 - Psyr_2547 0.29 -0.4
2,961,890 - Psyr_2547 0.37 +3.5
2,961,910 - Psyr_2547 0.39 +1.0
2,961,910 - Psyr_2547 0.39 +1.0

Or see this region's nucleotide sequence