Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0509

Experiment: KB with Flavone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0508 and Psyr_0509 are separated by 296 nucleotidesPsyr_0509 and Psyr_0510 are separated by 32 nucleotidesPsyr_0510 and Psyr_0511 are separated by 26 nucleotidesPsyr_0511 and Psyr_0512 are separated by 7 nucleotides Psyr_0508: Psyr_0508 - lyase, putative, at 563,658 to 564,329 _0508 Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785 _0509 Psyr_0510: Psyr_0510 - conserved hypothetical protein, at 566,818 to 567,342 _0510 Psyr_0511: Psyr_0511 - conserved hypothetical protein, at 567,369 to 567,665 _0511 Psyr_0512: Psyr_0512 - GCN5-related N-acetyltransferase, at 567,673 to 568,131 _0512 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -2 -1 0 1 2 3at 563.633 kb on - strandat 563.633 kb on - strandat 563.689 kb on + strandat 563.689 kb on + strandat 563.689 kb on + strandat 563.690 kb on - strandat 563.690 kb on - strandat 563.690 kb on - strandat 563.740 kb on + strand, within Psyr_0508at 563.740 kb on + strand, within Psyr_0508at 563.740 kb on + strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.758 kb on + strand, within Psyr_0508at 563.759 kb on - strand, within Psyr_0508at 563.759 kb on - strand, within Psyr_0508at 563.759 kb on - strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.890 kb on - strand, within Psyr_0508at 563.890 kb on - strand, within Psyr_0508at 563.900 kb on - strand, within Psyr_0508at 563.974 kb on + strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 564.013 kb on + strand, within Psyr_0508at 564.014 kb on - strand, within Psyr_0508at 564.014 kb on - strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.054 kb on + strand, within Psyr_0508at 564.054 kb on + strand, within Psyr_0508at 564.055 kb on - strand, within Psyr_0508at 564.055 kb on - strand, within Psyr_0508at 564.055 kb on - strand, within Psyr_0508at 564.113 kb on + strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.160 kb on + strand, within Psyr_0508at 564.160 kb on + strand, within Psyr_0508at 564.160 kb on + strand, within Psyr_0508at 564.179 kb on + strand, within Psyr_0508at 564.232 kb on + strand, within Psyr_0508at 564.233 kb on - strand, within Psyr_0508at 564.233 kb on - strand, within Psyr_0508at 564.233 kb on - strand, within Psyr_0508at 564.236 kb on + strand, within Psyr_0508at 564.236 kb on + strand, within Psyr_0508at 564.245 kb on - strand, within Psyr_0508at 564.252 kb on + strand, within Psyr_0508at 564.252 kb on + strand, within Psyr_0508at 564.253 kb on - strand, within Psyr_0508at 564.253 kb on - strand, within Psyr_0508at 564.253 kb on - strand, within Psyr_0508at 564.255 kb on + strand, within Psyr_0508at 564.255 kb on + strand, within Psyr_0508at 564.256 kb on - strand, within Psyr_0508at 564.256 kb on - strand, within Psyr_0508at 564.256 kb on - strand, within Psyr_0508at 564.324 kb on + strandat 564.356 kb on + strandat 564.356 kb on + strandat 564.356 kb on + strandat 564.357 kb on - strandat 564.402 kb on + strandat 564.402 kb on + strandat 564.403 kb on - strandat 564.597 kb on + strandat 564.597 kb on + strandat 564.597 kb on + strandat 564.597 kb on + strandat 564.598 kb on - strandat 564.598 kb on - strandat 564.690 kb on + strandat 564.691 kb on - strandat 564.699 kb on + strandat 564.783 kb on + strandat 564.784 kb on - strandat 564.798 kb on + strandat 564.799 kb on - strandat 564.963 kb on - strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 565.197 kb on + strand, within Psyr_0509at 565.197 kb on + strand, within Psyr_0509at 565.198 kb on - strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.263 kb on + strand, within Psyr_0509at 565.263 kb on + strand, within Psyr_0509at 565.263 kb on + strand, within Psyr_0509at 565.264 kb on - strand, within Psyr_0509at 565.289 kb on + strand, within Psyr_0509at 565.290 kb on - strand, within Psyr_0509at 565.317 kb on - strand, within Psyr_0509at 565.317 kb on - strand, within Psyr_0509at 565.430 kb on - strand, within Psyr_0509at 565.451 kb on + strand, within Psyr_0509at 565.517 kb on + strand, within Psyr_0509at 565.562 kb on - strand, within Psyr_0509at 565.562 kb on - strand, within Psyr_0509at 565.565 kb on + strand, within Psyr_0509at 565.565 kb on + strand, within Psyr_0509at 565.566 kb on - strand, within Psyr_0509at 565.566 kb on - strand, within Psyr_0509at 565.566 kb on - strand, within Psyr_0509at 565.566 kb on - strand, within Psyr_0509at 565.644 kb on + strand, within Psyr_0509at 565.644 kb on + strand, within Psyr_0509at 565.645 kb on - strand, within Psyr_0509at 565.645 kb on - strand, within Psyr_0509at 565.688 kb on + strand, within Psyr_0509at 565.689 kb on - strand, within Psyr_0509at 565.916 kb on + strand, within Psyr_0509at 565.916 kb on + strand, within Psyr_0509at 565.916 kb on + strand, within Psyr_0509at 565.916 kb on + strand, within Psyr_0509at 565.916 kb on + strand, within Psyr_0509at 565.916 kb on + strand, within Psyr_0509at 565.916 kb on + strand, within Psyr_0509at 565.917 kb on - strand, within Psyr_0509at 565.917 kb on - strand, within Psyr_0509at 565.917 kb on - strand, within Psyr_0509at 565.917 kb on - strand, within Psyr_0509at 565.917 kb on - strand, within Psyr_0509at 565.917 kb on - strand, within Psyr_0509at 565.955 kb on + strand, within Psyr_0509at 565.956 kb on - strand, within Psyr_0509at 566.048 kb on + strand, within Psyr_0509at 566.048 kb on + strand, within Psyr_0509at 566.048 kb on + strand, within Psyr_0509at 566.049 kb on - strand, within Psyr_0509at 566.049 kb on - strand, within Psyr_0509at 566.049 kb on - strand, within Psyr_0509at 566.358 kb on + strand, within Psyr_0509at 566.359 kb on - strand, within Psyr_0509at 566.359 kb on - strand, within Psyr_0509at 566.545 kb on + strand, within Psyr_0509at 566.584 kb on + strandat 566.585 kb on - strandat 566.783 kb on + strandat 566.783 kb on + strandat 566.783 kb on + strandat 566.784 kb on - strandat 566.784 kb on - strandat 566.784 kb on - strandat 566.784 kb on - strandat 566.849 kb on - strandat 566.921 kb on - strand, within Psyr_0510at 566.974 kb on + strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.299 kb on - strandat 567.308 kb on - strandat 567.399 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.412 kb on - strand, within Psyr_0511at 567.420 kb on + strand, within Psyr_0511at 567.421 kb on - strand, within Psyr_0511at 567.503 kb on + strand, within Psyr_0511at 567.504 kb on - strand, within Psyr_0511at 567.658 kb on - strandat 567.758 kb on + strand, within Psyr_0512at 567.761 kb on + strand, within Psyr_0512at 567.761 kb on + strand, within Psyr_0512at 567.762 kb on - strand, within Psyr_0512

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml
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563,633 - +0.4
563,633 - -1.6
563,689 + +0.3
563,689 + +0.3
563,689 + +1.3
563,690 - -0.2
563,690 - -1.1
563,690 - -1.5
563,740 + Psyr_0508 0.12 +0.7
563,740 + Psyr_0508 0.12 +0.1
563,740 + Psyr_0508 0.12 +0.6
563,741 - Psyr_0508 0.12 -1.5
563,741 - Psyr_0508 0.12 -0.7
563,741 - Psyr_0508 0.12 +1.5
563,741 - Psyr_0508 0.12 +0.4
563,741 - Psyr_0508 0.12 -0.5
563,741 - Psyr_0508 0.12 -2.6
563,741 - Psyr_0508 0.12 +0.1
563,758 + Psyr_0508 0.15 +0.1
563,759 - Psyr_0508 0.15 +1.6
563,759 - Psyr_0508 0.15 +0.3
563,759 - Psyr_0508 0.15 -1.9
563,857 + Psyr_0508 0.30 -0.2
563,857 + Psyr_0508 0.30 +0.6
563,857 + Psyr_0508 0.30 -1.3
563,857 + Psyr_0508 0.30 +1.0
563,858 - Psyr_0508 0.30 -1.2
563,858 - Psyr_0508 0.30 -0.5
563,858 - Psyr_0508 0.30 -0.5
563,858 - Psyr_0508 0.30 -1.4
563,890 - Psyr_0508 0.35 +0.1
563,890 - Psyr_0508 0.35 +2.9
563,900 - Psyr_0508 0.36 +0.8
563,974 + Psyr_0508 0.47 -0.3
563,975 - Psyr_0508 0.47 +0.2
563,975 - Psyr_0508 0.47 -1.3
563,975 - Psyr_0508 0.47 -1.5
563,975 - Psyr_0508 0.47 -0.0
564,013 + Psyr_0508 0.53 -0.1
564,014 - Psyr_0508 0.53 +0.2
564,014 - Psyr_0508 0.53 -0.2
564,021 + Psyr_0508 0.54 +0.2
564,021 + Psyr_0508 0.54 -0.4
564,021 + Psyr_0508 0.54 +0.4
564,021 + Psyr_0508 0.54 -0.4
564,021 + Psyr_0508 0.54 +0.0
564,021 + Psyr_0508 0.54 +0.0
564,021 + Psyr_0508 0.54 +1.1
564,021 + Psyr_0508 0.54 +0.0
564,022 - Psyr_0508 0.54 +0.5
564,022 - Psyr_0508 0.54 +0.6
564,022 - Psyr_0508 0.54 -0.7
564,054 + Psyr_0508 0.59 +0.4
564,054 + Psyr_0508 0.59 -0.1
564,055 - Psyr_0508 0.59 +0.4
564,055 - Psyr_0508 0.59 +0.2
564,055 - Psyr_0508 0.59 -0.1
564,113 + Psyr_0508 0.68 -1.9
564,114 - Psyr_0508 0.68 -0.7
564,114 - Psyr_0508 0.68 +1.4
564,114 - Psyr_0508 0.68 +0.1
564,114 - Psyr_0508 0.68 -0.5
564,114 - Psyr_0508 0.68 -0.7
564,114 - Psyr_0508 0.68 -0.2
564,114 - Psyr_0508 0.68 -0.7
564,114 - Psyr_0508 0.68 +0.1
564,160 + Psyr_0508 0.75 -1.0
564,160 + Psyr_0508 0.75 +0.9
564,160 + Psyr_0508 0.75 +0.6
564,179 + Psyr_0508 0.78 -0.8
564,232 + Psyr_0508 0.85 +0.0
564,233 - Psyr_0508 0.86 +0.2
564,233 - Psyr_0508 0.86 -0.8
564,233 - Psyr_0508 0.86 +0.1
564,236 + Psyr_0508 0.86 +0.8
564,236 + Psyr_0508 0.86 -0.1
564,245 - Psyr_0508 0.87 +1.3
564,252 + Psyr_0508 0.88 -0.5
564,252 + Psyr_0508 0.88 -1.6
564,253 - Psyr_0508 0.89 +1.3
564,253 - Psyr_0508 0.89 +0.2
564,253 - Psyr_0508 0.89 +0.9
564,255 + Psyr_0508 0.89 -0.4
564,255 + Psyr_0508 0.89 -0.7
564,256 - Psyr_0508 0.89 -1.7
564,256 - Psyr_0508 0.89 -2.6
564,256 - Psyr_0508 0.89 +0.9
564,324 + -0.4
564,356 + +0.1
564,356 + -0.9
564,356 + -0.5
564,357 - +1.3
564,402 + +0.4
564,402 + -0.7
564,403 - +3.7
564,597 + -0.5
564,597 + -0.0
564,597 + -1.7
564,597 + -0.8
564,598 - -0.5
564,598 - -0.6
564,690 + -0.7
564,691 - -2.7
564,699 + -0.6
564,783 + +0.5
564,784 - -1.8
564,798 + +1.1
564,799 - -0.1
564,963 - Psyr_0509 0.16 +0.5
564,983 + Psyr_0509 0.17 -0.9
564,983 + Psyr_0509 0.17 +0.3
564,983 + Psyr_0509 0.17 +0.1
564,983 + Psyr_0509 0.17 +0.3
564,983 + Psyr_0509 0.17 +0.8
565,197 + Psyr_0509 0.26 -0.5
565,197 + Psyr_0509 0.26 +0.5
565,198 - Psyr_0509 0.26 +1.0
565,244 + Psyr_0509 0.29 +0.5
565,244 + Psyr_0509 0.29 -0.2
565,244 + Psyr_0509 0.29 +2.1
565,244 + Psyr_0509 0.29 -0.9
565,244 + Psyr_0509 0.29 +1.0
565,244 + Psyr_0509 0.29 +1.5
565,244 + Psyr_0509 0.29 +0.6
565,244 + Psyr_0509 0.29 +1.8
565,244 + Psyr_0509 0.29 -0.7
565,244 + Psyr_0509 0.29 -0.3
565,244 + Psyr_0509 0.29 +0.1
565,245 - Psyr_0509 0.29 +0.2
565,245 - Psyr_0509 0.29 +0.2
565,245 - Psyr_0509 0.29 +1.1
565,245 - Psyr_0509 0.29 +1.5
565,245 - Psyr_0509 0.29 +0.5
565,245 - Psyr_0509 0.29 +1.6
565,263 + Psyr_0509 0.29 +0.1
565,263 + Psyr_0509 0.29 +0.9
565,263 + Psyr_0509 0.29 -0.0
565,264 - Psyr_0509 0.30 -0.2
565,289 + Psyr_0509 0.31 -0.5
565,290 - Psyr_0509 0.31 -0.2
565,317 - Psyr_0509 0.32 +0.5
565,317 - Psyr_0509 0.32 -0.2
565,430 - Psyr_0509 0.37 -0.8
565,451 + Psyr_0509 0.38 -0.1
565,517 + Psyr_0509 0.41 +0.9
565,562 - Psyr_0509 0.43 -0.1
565,562 - Psyr_0509 0.43 -0.4
565,565 + Psyr_0509 0.43 -0.5
565,565 + Psyr_0509 0.43 -1.5
565,566 - Psyr_0509 0.44 +0.5
565,566 - Psyr_0509 0.44 -0.7
565,566 - Psyr_0509 0.44 -0.2
565,566 - Psyr_0509 0.44 -0.4
565,644 + Psyr_0509 0.47 +0.3
565,644 + Psyr_0509 0.47 -0.5
565,645 - Psyr_0509 0.47 -0.6
565,645 - Psyr_0509 0.47 +0.5
565,688 + Psyr_0509 0.49 +1.6
565,689 - Psyr_0509 0.49 +0.5
565,916 + Psyr_0509 0.60 +0.3
565,916 + Psyr_0509 0.60 -0.4
565,916 + Psyr_0509 0.60 +0.7
565,916 + Psyr_0509 0.60 -0.6
565,916 + Psyr_0509 0.60 +0.6
565,916 + Psyr_0509 0.60 +0.3
565,916 + Psyr_0509 0.60 +0.9
565,917 - Psyr_0509 0.60 -1.1
565,917 - Psyr_0509 0.60 -0.3
565,917 - Psyr_0509 0.60 -0.4
565,917 - Psyr_0509 0.60 -0.5
565,917 - Psyr_0509 0.60 -0.7
565,917 - Psyr_0509 0.60 -0.1
565,955 + Psyr_0509 0.62 +0.6
565,956 - Psyr_0509 0.62 -1.1
566,048 + Psyr_0509 0.66 +0.3
566,048 + Psyr_0509 0.66 +0.1
566,048 + Psyr_0509 0.66 -0.8
566,049 - Psyr_0509 0.66 +0.4
566,049 - Psyr_0509 0.66 +0.4
566,049 - Psyr_0509 0.66 +0.7
566,358 + Psyr_0509 0.80 -0.4
566,359 - Psyr_0509 0.80 +0.2
566,359 - Psyr_0509 0.80 +0.0
566,545 + Psyr_0509 0.89 +0.0
566,584 + +0.1
566,585 - +0.6
566,783 + -1.5
566,783 + +1.3
566,783 + +0.9
566,784 - -0.8
566,784 - -0.9
566,784 - -0.0
566,784 - +0.3
566,849 - -1.1
566,921 - Psyr_0510 0.20 +0.9
566,974 + Psyr_0510 0.30 +2.1
567,239 - Psyr_0510 0.80 +1.6
567,239 - Psyr_0510 0.80 -0.0
567,239 - Psyr_0510 0.80 +0.3
567,239 - Psyr_0510 0.80 +0.3
567,299 - -0.1
567,308 - +1.1
567,399 + Psyr_0511 0.10 -0.0
567,411 + Psyr_0511 0.14 +0.7
567,411 + Psyr_0511 0.14 +0.7
567,411 + Psyr_0511 0.14 +0.5
567,412 - Psyr_0511 0.14 +0.3
567,420 + Psyr_0511 0.17 +1.1
567,421 - Psyr_0511 0.18 -0.2
567,503 + Psyr_0511 0.45 +1.4
567,504 - Psyr_0511 0.45 -0.6
567,658 - -1.7
567,758 + Psyr_0512 0.19 -1.5
567,761 + Psyr_0512 0.19 +0.9
567,761 + Psyr_0512 0.19 +0.3
567,762 - Psyr_0512 0.19 +0.3

Or see this region's nucleotide sequence