Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0241

Experiment: KB with Flavone 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0238 and Psyr_0239 are separated by 25 nucleotidesPsyr_0239 and Psyr_0240 overlap by 4 nucleotidesPsyr_0240 and Psyr_0241 are separated by 49 nucleotidesPsyr_0241 and Psyr_0242 are separated by 47 nucleotidesPsyr_0242 and Psyr_0243 are separated by 81 nucleotides Psyr_0238: Psyr_0238 - Helix-turn-helix motif protein, at 251,961 to 252,560 _0238 Psyr_0239: Psyr_0239 - cytochrome c5, at 252,586 to 252,909 _0239 Psyr_0240: Psyr_0240 - hypothetical protein, at 252,906 to 253,160 _0240 Psyr_0241: Psyr_0241 - conserved hypothetical protein, at 253,210 to 255,141 _0241 Psyr_0242: Psyr_0242 - Protein of unknown function DUF962, at 255,189 to 255,713 _0242 Psyr_0243: Psyr_0243 - cyclic nucleotide-binding protein, at 255,795 to 256,505 _0243 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 252.238 kb on - strand, within Psyr_0238at 252.238 kb on - strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.262 kb on + strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.340 kb on - strand, within Psyr_0238at 252.340 kb on - strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.472 kb on - strand, within Psyr_0238at 252.472 kb on - strand, within Psyr_0238at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.959 kb on + strand, within Psyr_0240at 252.960 kb on - strand, within Psyr_0240at 253.008 kb on - strand, within Psyr_0240at 253.031 kb on + strand, within Psyr_0240at 253.031 kb on + strand, within Psyr_0240at 253.032 kb on - strand, within Psyr_0240at 253.119 kb on + strand, within Psyr_0240at 253.119 kb on + strand, within Psyr_0240at 253.119 kb on + strand, within Psyr_0240at 253.119 kb on + strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.122 kb on - strand, within Psyr_0240at 253.122 kb on - strand, within Psyr_0240at 253.127 kb on + strand, within Psyr_0240at 253.189 kb on + strandat 253.262 kb on + strandat 253.272 kb on + strandat 253.272 kb on + strandat 253.273 kb on - strandat 253.273 kb on - strandat 253.330 kb on + strandat 253.330 kb on + strandat 253.330 kb on + strandat 253.331 kb on - strandat 253.372 kb on + strandat 253.372 kb on + strandat 253.372 kb on + strandat 253.372 kb on + strandat 253.372 kb on + strandat 253.373 kb on - strandat 253.373 kb on - strandat 253.373 kb on - strandat 253.373 kb on - strandat 253.373 kb on - strandat 253.582 kb on + strand, within Psyr_0241at 253.582 kb on + strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.597 kb on + strand, within Psyr_0241at 253.597 kb on + strand, within Psyr_0241at 253.597 kb on + strand, within Psyr_0241at 253.598 kb on - strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.866 kb on + strand, within Psyr_0241at 253.867 kb on - strand, within Psyr_0241at 253.867 kb on - strand, within Psyr_0241at 253.867 kb on - strand, within Psyr_0241at 253.887 kb on + strand, within Psyr_0241at 253.888 kb on - strand, within Psyr_0241at 253.958 kb on + strand, within Psyr_0241at 253.959 kb on - strand, within Psyr_0241at 254.064 kb on + strand, within Psyr_0241at 254.064 kb on + strand, within Psyr_0241at 254.064 kb on + strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.081 kb on + strand, within Psyr_0241at 254.123 kb on - strand, within Psyr_0241at 254.194 kb on + strand, within Psyr_0241at 254.194 kb on + strand, within Psyr_0241at 254.194 kb on + strand, within Psyr_0241at 254.194 kb on + strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.369 kb on - strand, within Psyr_0241at 254.521 kb on + strand, within Psyr_0241at 254.521 kb on + strand, within Psyr_0241at 254.521 kb on + strand, within Psyr_0241at 254.522 kb on - strand, within Psyr_0241at 254.522 kb on - strand, within Psyr_0241at 254.629 kb on + strand, within Psyr_0241at 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.089 kb on - strandat 255.089 kb on - strandat 255.089 kb on - strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.191 kb on - strandat 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.359 kb on - strand, within Psyr_0242at 255.361 kb on + strand, within Psyr_0242at 255.361 kb on + strand, within Psyr_0242at 255.362 kb on - strand, within Psyr_0242at 255.465 kb on - strand, within Psyr_0242at 255.465 kb on - strand, within Psyr_0242at 255.520 kb on + strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.653 kb on + strand, within Psyr_0242at 255.654 kb on - strand, within Psyr_0242at 255.673 kb on + strandat 255.674 kb on - strandat 255.714 kb on + strandat 255.714 kb on + strandat 255.718 kb on - strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.838 kb on - strandat 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml
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252,238 - Psyr_0238 0.46 -1.0
252,238 - Psyr_0238 0.46 -0.0
252,260 + Psyr_0238 0.50 +1.3
252,260 + Psyr_0238 0.50 -0.4
252,260 + Psyr_0238 0.50 +0.3
252,261 - Psyr_0238 0.50 -0.2
252,261 - Psyr_0238 0.50 -0.4
252,261 - Psyr_0238 0.50 +0.5
252,261 - Psyr_0238 0.50 +0.1
252,261 - Psyr_0238 0.50 +0.1
252,261 - Psyr_0238 0.50 -0.8
252,262 + Psyr_0238 0.50 -1.4
252,263 - Psyr_0238 0.50 +0.6
252,263 - Psyr_0238 0.50 +0.7
252,263 - Psyr_0238 0.50 -0.8
252,263 - Psyr_0238 0.50 +0.4
252,340 - Psyr_0238 0.63 +1.3
252,340 - Psyr_0238 0.63 +1.6
252,444 + Psyr_0238 0.81 +0.2
252,444 + Psyr_0238 0.81 +0.1
252,444 + Psyr_0238 0.81 -0.5
252,444 + Psyr_0238 0.81 +0.1
252,444 + Psyr_0238 0.81 +0.5
252,444 + Psyr_0238 0.81 -0.4
252,444 + Psyr_0238 0.81 +0.1
252,444 + Psyr_0238 0.81 -0.1
252,444 + Psyr_0238 0.81 -0.4
252,444 + Psyr_0238 0.81 -0.5
252,444 + Psyr_0238 0.81 +1.5
252,444 + Psyr_0238 0.81 +0.8
252,444 + Psyr_0238 0.81 +1.3
252,444 + Psyr_0238 0.81 -0.5
252,444 + Psyr_0238 0.81 -1.0
252,444 + Psyr_0238 0.81 +0.4
252,444 + Psyr_0238 0.81 -0.6
252,444 + Psyr_0238 0.81 +0.2
252,444 + Psyr_0238 0.81 +0.8
252,445 - Psyr_0238 0.81 -0.9
252,445 - Psyr_0238 0.81 -2.0
252,445 - Psyr_0238 0.81 +0.4
252,445 - Psyr_0238 0.81 +0.5
252,445 - Psyr_0238 0.81 -1.0
252,445 - Psyr_0238 0.81 -0.9
252,445 - Psyr_0238 0.81 +0.2
252,445 - Psyr_0238 0.81 -0.5
252,468 + Psyr_0238 0.84 -0.0
252,468 + Psyr_0238 0.84 +0.9
252,468 + Psyr_0238 0.84 +0.8
252,468 + Psyr_0238 0.84 -0.7
252,469 - Psyr_0238 0.85 +1.3
252,469 - Psyr_0238 0.85 +0.4
252,469 - Psyr_0238 0.85 +0.6
252,469 - Psyr_0238 0.85 +0.3
252,469 - Psyr_0238 0.85 +0.9
252,471 + Psyr_0238 0.85 +0.5
252,471 + Psyr_0238 0.85 -0.3
252,471 + Psyr_0238 0.85 -0.8
252,472 - Psyr_0238 0.85 -0.2
252,472 - Psyr_0238 0.85 -0.4
252,716 + Psyr_0239 0.40 -1.3
252,716 + Psyr_0239 0.40 +0.1
252,716 + Psyr_0239 0.40 +0.0
252,716 + Psyr_0239 0.40 -0.4
252,716 + Psyr_0239 0.40 -0.0
252,716 + Psyr_0239 0.40 -0.6
252,959 + Psyr_0240 0.21 +2.9
252,960 - Psyr_0240 0.21 +0.0
253,008 - Psyr_0240 0.40 +0.6
253,031 + Psyr_0240 0.49 -0.2
253,031 + Psyr_0240 0.49 +0.3
253,032 - Psyr_0240 0.49 +1.7
253,119 + Psyr_0240 0.84 +0.2
253,119 + Psyr_0240 0.84 +0.2
253,119 + Psyr_0240 0.84 -0.2
253,119 + Psyr_0240 0.84 -0.6
253,120 - Psyr_0240 0.84 +0.3
253,120 - Psyr_0240 0.84 -0.1
253,120 - Psyr_0240 0.84 -0.2
253,120 - Psyr_0240 0.84 -0.6
253,120 - Psyr_0240 0.84 +1.3
253,120 - Psyr_0240 0.84 -0.1
253,122 - Psyr_0240 0.85 +1.1
253,122 - Psyr_0240 0.85 -0.1
253,127 + Psyr_0240 0.87 -0.2
253,189 + -0.6
253,262 + +1.5
253,272 + -0.1
253,272 + +0.5
253,273 - -0.2
253,273 - -0.3
253,330 + +0.4
253,330 + +0.3
253,330 + -0.2
253,331 - +0.2
253,372 + +0.9
253,372 + -2.0
253,372 + +0.9
253,372 + -0.5
253,372 + +0.7
253,373 - +1.2
253,373 - +0.3
253,373 - +1.0
253,373 - +0.8
253,373 - +0.5
253,582 + Psyr_0241 0.19 -0.5
253,582 + Psyr_0241 0.19 -0.5
253,583 - Psyr_0241 0.19 -1.1
253,583 - Psyr_0241 0.19 -0.4
253,583 - Psyr_0241 0.19 -1.7
253,583 - Psyr_0241 0.19 +0.0
253,583 - Psyr_0241 0.19 +0.0
253,583 - Psyr_0241 0.19 -0.6
253,583 - Psyr_0241 0.19 +0.6
253,583 - Psyr_0241 0.19 +0.1
253,583 - Psyr_0241 0.19 +0.7
253,597 + Psyr_0241 0.20 +0.4
253,597 + Psyr_0241 0.20 +0.5
253,597 + Psyr_0241 0.20 -1.0
253,598 - Psyr_0241 0.20 +0.3
253,798 + Psyr_0241 0.30 -1.0
253,798 + Psyr_0241 0.30 +0.4
253,798 + Psyr_0241 0.30 +0.1
253,798 + Psyr_0241 0.30 +0.3
253,798 + Psyr_0241 0.30 +0.5
253,798 + Psyr_0241 0.30 +1.2
253,798 + Psyr_0241 0.30 -0.4
253,798 + Psyr_0241 0.30 +0.1
253,798 + Psyr_0241 0.30 +0.4
253,798 + Psyr_0241 0.30 -0.7
253,798 + Psyr_0241 0.30 -0.8
253,798 + Psyr_0241 0.30 +1.0
253,798 + Psyr_0241 0.30 +1.1
253,798 + Psyr_0241 0.30 -0.8
253,798 + Psyr_0241 0.30 +0.8
253,798 + Psyr_0241 0.30 -0.4
253,798 + Psyr_0241 0.30 +1.1
253,799 - Psyr_0241 0.30 +0.6
253,799 - Psyr_0241 0.30 +0.5
253,799 - Psyr_0241 0.30 -0.1
253,799 - Psyr_0241 0.30 -0.7
253,799 - Psyr_0241 0.30 +1.5
253,799 - Psyr_0241 0.30 +4.5
253,799 - Psyr_0241 0.30 +0.2
253,799 - Psyr_0241 0.30 +1.0
253,799 - Psyr_0241 0.30 +0.1
253,799 - Psyr_0241 0.30 +0.0
253,799 - Psyr_0241 0.30 +0.3
253,799 - Psyr_0241 0.30 -0.3
253,866 + Psyr_0241 0.34 +1.7
253,867 - Psyr_0241 0.34 +0.6
253,867 - Psyr_0241 0.34 -0.4
253,867 - Psyr_0241 0.34 -3.3
253,887 + Psyr_0241 0.35 +1.1
253,888 - Psyr_0241 0.35 +0.8
253,958 + Psyr_0241 0.39 +0.0
253,959 - Psyr_0241 0.39 +1.1
254,064 + Psyr_0241 0.44 +0.8
254,064 + Psyr_0241 0.44 -0.3
254,064 + Psyr_0241 0.44 -1.6
254,065 - Psyr_0241 0.44 +1.6
254,065 - Psyr_0241 0.44 +0.2
254,065 - Psyr_0241 0.44 -0.3
254,065 - Psyr_0241 0.44 -0.5
254,065 - Psyr_0241 0.44 -0.6
254,081 + Psyr_0241 0.45 +1.3
254,123 - Psyr_0241 0.47 -0.3
254,194 + Psyr_0241 0.51 +0.0
254,194 + Psyr_0241 0.51 +0.5
254,194 + Psyr_0241 0.51 +1.6
254,194 + Psyr_0241 0.51 +0.9
254,195 - Psyr_0241 0.51 +0.3
254,195 - Psyr_0241 0.51 +0.3
254,195 - Psyr_0241 0.51 -0.6
254,195 - Psyr_0241 0.51 +2.3
254,195 - Psyr_0241 0.51 +0.4
254,195 - Psyr_0241 0.51 -0.1
254,195 - Psyr_0241 0.51 -0.2
254,368 + Psyr_0241 0.60 +0.7
254,368 + Psyr_0241 0.60 +1.0
254,368 + Psyr_0241 0.60 +0.8
254,368 + Psyr_0241 0.60 -0.2
254,368 + Psyr_0241 0.60 +0.4
254,368 + Psyr_0241 0.60 -0.3
254,369 - Psyr_0241 0.60 -0.1
254,521 + Psyr_0241 0.68 -0.3
254,521 + Psyr_0241 0.68 +0.0
254,521 + Psyr_0241 0.68 +0.2
254,522 - Psyr_0241 0.68 -0.1
254,522 - Psyr_0241 0.68 -0.9
254,629 + Psyr_0241 0.73 -0.4
255,088 + -0.3
255,088 + +0.9
255,088 + +0.1
255,088 + +0.1
255,088 + -1.5
255,089 - -0.6
255,089 - -0.4
255,089 - -1.3
255,190 + +2.0
255,190 + +0.8
255,190 + +0.1
255,190 + -0.3
255,191 - -0.5
255,358 + Psyr_0242 0.32 +0.3
255,358 + Psyr_0242 0.32 +0.1
255,358 + Psyr_0242 0.32 +0.7
255,358 + Psyr_0242 0.32 +0.6
255,359 - Psyr_0242 0.32 +0.1
255,361 + Psyr_0242 0.33 +0.1
255,361 + Psyr_0242 0.33 +0.5
255,362 - Psyr_0242 0.33 +0.7
255,465 - Psyr_0242 0.53 +1.6
255,465 - Psyr_0242 0.53 +0.3
255,520 + Psyr_0242 0.63 +0.5
255,521 - Psyr_0242 0.63 +0.6
255,521 - Psyr_0242 0.63 +0.9
255,521 - Psyr_0242 0.63 +0.4
255,521 - Psyr_0242 0.63 +0.9
255,653 + Psyr_0242 0.88 +0.3
255,654 - Psyr_0242 0.89 +0.1
255,673 + +0.6
255,674 - +1.2
255,714 + +0.6
255,714 + -0.6
255,718 - -0.5
255,760 + +0.8
255,760 + +0.9
255,760 + +0.1
255,760 + -0.9
255,838 - +0.8
255,954 + Psyr_0243 0.22 +0.9
255,954 + Psyr_0243 0.22 +0.5
255,954 + Psyr_0243 0.22 +1.4
255,954 + Psyr_0243 0.22 -0.8
255,954 + Psyr_0243 0.22 +0.5
255,955 - Psyr_0243 0.23 +0.4
255,955 - Psyr_0243 0.23 -1.5
255,955 - Psyr_0243 0.23 -0.9
255,955 - Psyr_0243 0.23 -0.5
255,955 - Psyr_0243 0.23 +0.9
255,955 - Psyr_0243 0.23 +0.4
255,955 - Psyr_0243 0.23 -0.2

Or see this region's nucleotide sequence