Experiment: KB with Flavone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0138 and Psyr_0139 are separated by 144 nucleotides Psyr_0139 and Psyr_0140 are separated by 1 nucleotides
Psyr_0138: Psyr_0138 - TonB-dependent receptor:TonB-dependent receptor, at 146,598 to 149,312
_0138
Psyr_0139: Psyr_0139 - extracellular solute-binding protein, family 5, at 149,457 to 151,340
_0139
Psyr_0140: Psyr_0140 - Binding-protein-dependent transport systems inner membrane component, at 151,342 to 152,409
_0140
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 148.461 kb on + strand, within Psyr_0138 at 148.461 kb on + strand, within Psyr_0138 at 148.462 kb on - strand, within Psyr_0138 at 148.473 kb on - strand, within Psyr_0138 at 148.494 kb on + strand, within Psyr_0138 at 148.494 kb on + strand, within Psyr_0138 at 148.495 kb on - strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.645 kb on - strand, within Psyr_0138 at 148.748 kb on + strand, within Psyr_0138 at 148.749 kb on - strand, within Psyr_0138 at 148.752 kb on + strand, within Psyr_0138 at 148.752 kb on + strand, within Psyr_0138 at 148.753 kb on - strand, within Psyr_0138 at 148.765 kb on - strand, within Psyr_0138 at 148.882 kb on - strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.956 kb on + strand, within Psyr_0138 at 148.957 kb on - strand, within Psyr_0138 at 148.957 kb on - strand, within Psyr_0138 at 149.079 kb on + strand at 149.080 kb on - strand at 149.088 kb on + strand at 149.121 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.230 kb on - strand at 149.230 kb on - strand at 149.301 kb on + strand at 149.301 kb on + strand at 149.301 kb on + strand at 149.302 kb on - strand at 149.302 kb on - strand at 149.302 kb on - strand at 149.332 kb on - strand at 149.332 kb on - strand at 149.439 kb on + strand at 149.440 kb on - strand at 149.559 kb on + strand at 149.559 kb on + strand at 149.560 kb on - strand at 149.560 kb on - strand at 149.604 kb on + strand at 149.673 kb on + strand, within Psyr_0139 at 149.674 kb on - strand, within Psyr_0139 at 149.730 kb on + strand, within Psyr_0139 at 149.766 kb on + strand, within Psyr_0139 at 149.766 kb on + strand, within Psyr_0139 at 149.775 kb on + strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.893 kb on - strand, within Psyr_0139 at 149.931 kb on + strand, within Psyr_0139 at 150.219 kb on + strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.237 kb on - strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.249 kb on + strand, within Psyr_0139 at 150.300 kb on + strand, within Psyr_0139 at 150.300 kb on + strand, within Psyr_0139 at 150.301 kb on - strand, within Psyr_0139 at 150.301 kb on - strand, within Psyr_0139 at 150.525 kb on + strand, within Psyr_0139 at 150.526 kb on - strand, within Psyr_0139 at 150.526 kb on - strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.651 kb on + strand, within Psyr_0139 at 150.652 kb on - strand, within Psyr_0139 at 150.894 kb on + strand, within Psyr_0139 at 150.894 kb on + strand, within Psyr_0139 at 150.894 kb on + strand, within Psyr_0139 at 150.894 kb on + strand, within Psyr_0139 at 150.895 kb on - strand, within Psyr_0139 at 150.895 kb on - strand, within Psyr_0139 at 150.895 kb on - strand, within Psyr_0139 at 150.895 kb on - strand, within Psyr_0139 at 150.921 kb on + strand, within Psyr_0139 at 150.987 kb on + strand, within Psyr_0139 at 150.987 kb on + strand, within Psyr_0139 at 150.987 kb on + strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.996 kb on + strand, within Psyr_0139 at 151.117 kb on - strand, within Psyr_0139 at 151.152 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.173 kb on + strand at 151.236 kb on + strand at 151.236 kb on + strand at 151.236 kb on + strand at 151.236 kb on + strand at 151.237 kb on - strand at 151.336 kb on - strand at 151.336 kb on - strand at 151.351 kb on + strand at 151.351 kb on + strand at 151.352 kb on - strand at 151.352 kb on - strand at 151.585 kb on + strand, within Psyr_0140 at 151.586 kb on - strand, within Psyr_0140 at 151.636 kb on + strand, within Psyr_0140 at 151.636 kb on + strand, within Psyr_0140 at 151.637 kb on - strand, within Psyr_0140 at 151.750 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.901 kb on - strand, within Psyr_0140 at 151.901 kb on - strand, within Psyr_0140 at 151.978 kb on + strand, within Psyr_0140 at 151.978 kb on + strand, within Psyr_0140 at 151.978 kb on + strand, within Psyr_0140 at 151.978 kb on + strand, within Psyr_0140 at 151.979 kb on - strand, within Psyr_0140 at 151.979 kb on - strand, within Psyr_0140 at 152.083 kb on + strand, within Psyr_0140 at 152.131 kb on + strand, within Psyr_0140 at 152.256 kb on + strand, within Psyr_0140 at 152.256 kb on + strand, within Psyr_0140 at 152.257 kb on - strand, within Psyr_0140
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml remove 148,461 + Psyr_0138 0.69 +0.1 148,461 + Psyr_0138 0.69 +0.0 148,462 - Psyr_0138 0.69 -0.9 148,473 - Psyr_0138 0.69 +2.5 148,494 + Psyr_0138 0.70 +1.3 148,494 + Psyr_0138 0.70 -0.2 148,495 - Psyr_0138 0.70 -1.0 148,497 + Psyr_0138 0.70 -0.4 148,497 + Psyr_0138 0.70 +0.4 148,497 + Psyr_0138 0.70 +0.4 148,497 + Psyr_0138 0.70 -0.3 148,497 + Psyr_0138 0.70 +0.5 148,497 + Psyr_0138 0.70 +1.3 148,497 + Psyr_0138 0.70 +0.3 148,497 + Psyr_0138 0.70 -0.2 148,497 + Psyr_0138 0.70 -0.3 148,498 - Psyr_0138 0.70 -1.1 148,498 - Psyr_0138 0.70 +0.3 148,498 - Psyr_0138 0.70 -1.3 148,498 - Psyr_0138 0.70 -0.3 148,498 - Psyr_0138 0.70 +0.2 148,498 - Psyr_0138 0.70 +0.6 148,498 - Psyr_0138 0.70 +0.6 148,498 - Psyr_0138 0.70 -0.7 148,645 - Psyr_0138 0.75 +1.7 148,748 + Psyr_0138 0.79 +0.8 148,749 - Psyr_0138 0.79 +0.4 148,752 + Psyr_0138 0.79 -1.3 148,752 + Psyr_0138 0.79 +0.2 148,753 - Psyr_0138 0.79 -1.9 148,765 - Psyr_0138 0.80 +0.8 148,882 - Psyr_0138 0.84 -0.6 148,914 + Psyr_0138 0.85 +0.2 148,914 + Psyr_0138 0.85 -0.4 148,914 + Psyr_0138 0.85 +0.7 148,914 + Psyr_0138 0.85 -1.4 148,914 + Psyr_0138 0.85 +0.6 148,914 + Psyr_0138 0.85 -0.3 148,914 + Psyr_0138 0.85 +1.1 148,915 - Psyr_0138 0.85 +1.2 148,915 - Psyr_0138 0.85 +0.5 148,915 - Psyr_0138 0.85 +0.4 148,915 - Psyr_0138 0.85 -0.7 148,915 - Psyr_0138 0.85 -0.2 148,915 - Psyr_0138 0.85 +0.0 148,915 - Psyr_0138 0.85 -0.3 148,915 - Psyr_0138 0.85 -3.0 148,956 + Psyr_0138 0.87 -1.0 148,957 - Psyr_0138 0.87 -0.6 148,957 - Psyr_0138 0.87 -0.0 149,079 + -0.4 149,080 - +0.3 149,088 + +0.7 149,121 + +0.0 149,150 + +1.6 149,150 + +0.9 149,150 + +0.7 149,150 + -0.9 149,151 - -0.1 149,151 - +1.1 149,151 - +1.3 149,151 - -0.5 149,192 + +0.1 149,192 + -0.1 149,192 + +2.0 149,192 + +0.7 149,192 + +0.6 149,192 + +0.2 149,192 + +0.2 149,192 + +0.0 149,192 + +0.3 149,192 + -0.1 149,192 + -0.6 149,192 + +0.2 149,192 + -0.7 149,193 - +0.5 149,193 - -1.7 149,193 - -1.3 149,193 - -1.9 149,193 - +0.4 149,193 - -0.1 149,193 - +1.4 149,193 - -0.1 149,229 + -0.7 149,229 + +0.4 149,229 + -0.8 149,229 + +0.2 149,230 - +0.9 149,230 - -0.9 149,301 + +1.3 149,301 + -2.1 149,301 + +0.3 149,302 - -0.3 149,302 - +1.0 149,302 - +2.3 149,332 - +0.1 149,332 - +0.2 149,439 + +1.3 149,440 - -0.3 149,559 + -0.5 149,559 + +0.9 149,560 - +0.7 149,560 - +1.1 149,604 + -3.3 149,673 + Psyr_0139 0.11 +0.6 149,674 - Psyr_0139 0.12 +0.7 149,730 + Psyr_0139 0.14 +0.9 149,766 + Psyr_0139 0.16 -0.7 149,766 + Psyr_0139 0.16 -1.0 149,775 + Psyr_0139 0.17 +0.7 149,776 - Psyr_0139 0.17 +0.4 149,776 - Psyr_0139 0.17 +0.2 149,776 - Psyr_0139 0.17 +1.6 149,776 - Psyr_0139 0.17 +0.3 149,893 - Psyr_0139 0.23 -0.1 149,931 + Psyr_0139 0.25 -1.0 150,219 + Psyr_0139 0.40 +0.7 150,220 - Psyr_0139 0.40 +1.1 150,220 - Psyr_0139 0.40 +0.4 150,220 - Psyr_0139 0.40 +0.3 150,220 - Psyr_0139 0.40 -0.3 150,220 - Psyr_0139 0.40 -0.4 150,237 - Psyr_0139 0.41 +2.5 150,246 + Psyr_0139 0.42 -1.2 150,246 + Psyr_0139 0.42 -0.2 150,246 + Psyr_0139 0.42 +0.1 150,246 + Psyr_0139 0.42 +0.8 150,246 + Psyr_0139 0.42 -0.3 150,247 - Psyr_0139 0.42 +0.7 150,247 - Psyr_0139 0.42 -0.0 150,247 - Psyr_0139 0.42 +0.3 150,247 - Psyr_0139 0.42 -0.1 150,247 - Psyr_0139 0.42 +0.4 150,247 - Psyr_0139 0.42 -0.5 150,247 - Psyr_0139 0.42 +0.0 150,249 + Psyr_0139 0.42 +0.5 150,300 + Psyr_0139 0.45 +0.2 150,300 + Psyr_0139 0.45 +0.4 150,301 - Psyr_0139 0.45 +0.8 150,301 - Psyr_0139 0.45 -0.0 150,525 + Psyr_0139 0.57 +2.0 150,526 - Psyr_0139 0.57 +0.2 150,526 - Psyr_0139 0.57 -1.9 150,543 + Psyr_0139 0.58 -0.2 150,543 + Psyr_0139 0.58 -0.5 150,543 + Psyr_0139 0.58 +0.4 150,543 + Psyr_0139 0.58 +1.1 150,543 + Psyr_0139 0.58 +0.0 150,543 + Psyr_0139 0.58 +1.3 150,543 + Psyr_0139 0.58 +0.7 150,543 + Psyr_0139 0.58 +0.9 150,543 + Psyr_0139 0.58 +0.2 150,544 - Psyr_0139 0.58 -0.2 150,544 - Psyr_0139 0.58 +0.1 150,544 - Psyr_0139 0.58 +0.0 150,544 - Psyr_0139 0.58 +0.1 150,544 - Psyr_0139 0.58 +1.0 150,544 - Psyr_0139 0.58 -0.3 150,651 + Psyr_0139 0.63 +0.6 150,652 - Psyr_0139 0.63 -0.3 150,894 + Psyr_0139 0.76 +0.8 150,894 + Psyr_0139 0.76 -1.1 150,894 + Psyr_0139 0.76 +0.5 150,894 + Psyr_0139 0.76 -0.8 150,895 - Psyr_0139 0.76 +0.4 150,895 - Psyr_0139 0.76 +0.3 150,895 - Psyr_0139 0.76 -1.2 150,895 - Psyr_0139 0.76 -2.7 150,921 + Psyr_0139 0.78 +2.8 150,987 + Psyr_0139 0.81 +0.9 150,987 + Psyr_0139 0.81 -0.7 150,987 + Psyr_0139 0.81 +0.3 150,988 - Psyr_0139 0.81 +0.5 150,988 - Psyr_0139 0.81 +0.1 150,988 - Psyr_0139 0.81 +0.4 150,988 - Psyr_0139 0.81 -2.7 150,988 - Psyr_0139 0.81 +0.1 150,988 - Psyr_0139 0.81 -0.3 150,996 + Psyr_0139 0.82 +0.3 151,117 - Psyr_0139 0.88 -0.5 151,152 + -1.1 151,155 + -0.1 151,155 + -0.4 151,155 + -0.1 151,155 + +0.5 151,155 + -0.4 151,155 + +1.0 151,155 + -0.5 151,155 + +0.0 151,155 + +0.3 151,155 + -0.1 151,155 + -1.5 151,155 + +0.5 151,155 + -0.8 151,155 + +0.0 151,155 + +1.1 151,155 + +0.4 151,155 + -1.0 151,156 - +2.3 151,156 - -0.4 151,156 - -0.0 151,156 - -0.2 151,156 - +0.3 151,156 - +0.1 151,156 - +1.4 151,156 - +1.8 151,156 - +0.6 151,156 - -1.4 151,156 - +0.2 151,156 - -0.4 151,156 - +0.3 151,156 - +0.4 151,156 - -0.4 151,156 - -0.2 151,156 - +0.0 151,156 - +1.3 151,156 - +0.8 151,156 - +0.7 151,156 - -0.3 151,156 - -0.1 151,156 - +0.9 151,170 + +0.2 151,170 + -0.3 151,170 + +0.3 151,170 + -0.9 151,170 + -0.6 151,170 + +0.1 151,170 + -0.6 151,170 + -2.2 151,171 - -0.8 151,171 - -0.9 151,171 - -0.2 151,171 - -1.7 151,171 - +0.8 151,171 - +0.3 151,171 - +0.5 151,171 - -0.3 151,173 + +0.6 151,236 + +0.7 151,236 + +1.2 151,236 + -0.8 151,236 + -0.2 151,237 - +0.8 151,336 - +1.0 151,336 - +1.3 151,351 + -2.1 151,351 + -1.8 151,352 - +0.6 151,352 - -0.4 151,585 + Psyr_0140 0.23 +0.2 151,586 - Psyr_0140 0.23 -0.6 151,636 + Psyr_0140 0.28 +0.2 151,636 + Psyr_0140 0.28 -0.2 151,637 - Psyr_0140 0.28 -1.3 151,750 + Psyr_0140 0.38 +0.1 151,900 + Psyr_0140 0.52 -2.2 151,900 + Psyr_0140 0.52 -0.2 151,900 + Psyr_0140 0.52 -0.9 151,900 + Psyr_0140 0.52 -0.4 151,900 + Psyr_0140 0.52 -2.1 151,900 + Psyr_0140 0.52 +0.0 151,901 - Psyr_0140 0.52 +0.8 151,901 - Psyr_0140 0.52 -0.6 151,978 + Psyr_0140 0.60 -0.3 151,978 + Psyr_0140 0.60 -0.2 151,978 + Psyr_0140 0.60 +0.3 151,978 + Psyr_0140 0.60 -0.8 151,979 - Psyr_0140 0.60 -1.2 151,979 - Psyr_0140 0.60 -0.1 152,083 + Psyr_0140 0.69 -0.6 152,131 + Psyr_0140 0.74 -0.3 152,256 + Psyr_0140 0.86 -0.4 152,256 + Psyr_0140 0.86 -1.1 152,257 - Psyr_0140 0.86 +0.4
Or see this region's nucleotide sequence