Experiment: KB with Flavone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0135 and Psyr_0136 are separated by 53 nucleotides Psyr_0136 and Psyr_0137 overlap by 1 nucleotides Psyr_0137 and Psyr_0138 are separated by 210 nucleotides
Psyr_0135: Psyr_0135 - outer membrane transport energization protein TonB, at 144,401 to 145,225
_0135
Psyr_0136: Psyr_0136 - outer membrane transport energization protein ExbB, at 145,279 to 145,986
_0136
Psyr_0137: Psyr_0137 - outer membrane transport energization protein ExbD, at 145,986 to 146,387
_0137
Psyr_0138: Psyr_0138 - TonB-dependent receptor:TonB-dependent receptor, at 146,598 to 149,312
_0138
Position (kb) 145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 144.490 kb on + strand, within Psyr_0135 at 144.525 kb on + strand, within Psyr_0135 at 144.525 kb on + strand, within Psyr_0135 at 144.526 kb on - strand, within Psyr_0135 at 144.550 kb on - strand, within Psyr_0135 at 144.553 kb on + strand, within Psyr_0135 at 144.553 kb on + strand, within Psyr_0135 at 144.553 kb on + strand, within Psyr_0135 at 144.553 kb on + strand, within Psyr_0135 at 144.553 kb on + strand, within Psyr_0135 at 144.554 kb on - strand, within Psyr_0135 at 144.554 kb on - strand, within Psyr_0135 at 144.554 kb on - strand, within Psyr_0135 at 144.554 kb on - strand, within Psyr_0135 at 144.554 kb on - strand, within Psyr_0135 at 144.554 kb on - strand, within Psyr_0135 at 144.575 kb on + strand, within Psyr_0135 at 144.576 kb on - strand, within Psyr_0135 at 144.576 kb on - strand, within Psyr_0135 at 144.576 kb on - strand, within Psyr_0135 at 144.576 kb on - strand, within Psyr_0135 at 144.993 kb on - strand, within Psyr_0135 at 145.180 kb on - strand at 145.255 kb on - strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.274 kb on - strand at 145.343 kb on + strand at 145.381 kb on + strand, within Psyr_0136 at 145.382 kb on - strand, within Psyr_0136 at 145.382 kb on - strand, within Psyr_0136 at 145.382 kb on - strand, within Psyr_0136 at 145.382 kb on - strand, within Psyr_0136 at 145.382 kb on - strand, within Psyr_0136 at 145.382 kb on - strand, within Psyr_0136 at 145.472 kb on - strand, within Psyr_0136 at 145.491 kb on + strand, within Psyr_0136 at 145.607 kb on + strand, within Psyr_0136 at 145.607 kb on + strand, within Psyr_0136 at 145.608 kb on - strand, within Psyr_0136 at 145.834 kb on + strand, within Psyr_0136 at 145.834 kb on + strand, within Psyr_0136 at 145.835 kb on - strand, within Psyr_0136 at 145.835 kb on - strand, within Psyr_0136 at 145.835 kb on - strand, within Psyr_0136 at 145.984 kb on + strand at 145.984 kb on + strand at 145.985 kb on - strand at 146.199 kb on + strand, within Psyr_0137 at 146.199 kb on + strand, within Psyr_0137 at 146.366 kb on - strand at 146.587 kb on + strand at 146.788 kb on + strand at 146.788 kb on + strand at 146.788 kb on + strand at 146.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.25 mg/ml remove 144,490 + Psyr_0135 0.11 -1.2 144,525 + Psyr_0135 0.15 -1.0 144,525 + Psyr_0135 0.15 -0.0 144,526 - Psyr_0135 0.15 -1.3 144,550 - Psyr_0135 0.18 -0.3 144,553 + Psyr_0135 0.18 -1.4 144,553 + Psyr_0135 0.18 -3.2 144,553 + Psyr_0135 0.18 -0.8 144,553 + Psyr_0135 0.18 -0.4 144,553 + Psyr_0135 0.18 -0.5 144,554 - Psyr_0135 0.19 +1.3 144,554 - Psyr_0135 0.19 -1.0 144,554 - Psyr_0135 0.19 +1.6 144,554 - Psyr_0135 0.19 -0.0 144,554 - Psyr_0135 0.19 +0.5 144,554 - Psyr_0135 0.19 +0.7 144,575 + Psyr_0135 0.21 -1.2 144,576 - Psyr_0135 0.21 -0.7 144,576 - Psyr_0135 0.21 -3.7 144,576 - Psyr_0135 0.21 +0.3 144,576 - Psyr_0135 0.21 -0.4 144,993 - Psyr_0135 0.72 -0.5 145,180 - +1.0 145,255 - +1.3 145,273 + +0.5 145,273 + +1.1 145,274 - -0.3 145,343 + +3.6 145,381 + Psyr_0136 0.14 -0.0 145,382 - Psyr_0136 0.15 +1.7 145,382 - Psyr_0136 0.15 -0.3 145,382 - Psyr_0136 0.15 +1.3 145,382 - Psyr_0136 0.15 +1.6 145,382 - Psyr_0136 0.15 +0.5 145,382 - Psyr_0136 0.15 +1.3 145,472 - Psyr_0136 0.27 +1.1 145,491 + Psyr_0136 0.30 -1.7 145,607 + Psyr_0136 0.46 +0.7 145,607 + Psyr_0136 0.46 +0.6 145,608 - Psyr_0136 0.46 +0.6 145,834 + Psyr_0136 0.78 +0.1 145,834 + Psyr_0136 0.78 +0.7 145,835 - Psyr_0136 0.79 +0.2 145,835 - Psyr_0136 0.79 +0.3 145,835 - Psyr_0136 0.79 +0.1 145,984 + -0.9 145,984 + +1.1 145,985 - +1.1 146,199 + Psyr_0137 0.53 -0.7 146,199 + Psyr_0137 0.53 -0.7 146,366 - -0.0 146,587 + +3.6 146,788 + +0.7 146,788 + -0.8 146,788 + +0.5 146,788 + -0.7
Or see this region's nucleotide sequence