Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0059

Experiment: KB with Flavone 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Flavone 0.25 mg/ml
57,416	-		Psyr_0057	0.21	-0.7
57,416	-		Psyr_0057	0.21	-0.3
57,416	-		Psyr_0057	0.21	+0.9
57,416	-		Psyr_0057	0.21	+2.3
57,416	-		Psyr_0057	0.21	-0.1
57,438	+		Psyr_0057	0.35	-0.1
57,439	-		Psyr_0057	0.36	+0.7
57,439	-		Psyr_0057	0.36	+0.2
57,439	-		Psyr_0057	0.36	-0.4
57,439	-		Psyr_0057	0.36	-1.2
57,457	+		Psyr_0057	0.48	-0.7
57,457	+		Psyr_0057	0.48	-1.7
57,457	+		Psyr_0057	0.48	-1.9
57,457	+		Psyr_0057	0.48	-1.8
57,457	+		Psyr_0057	0.48	+0.4
57,457	+		Psyr_0057	0.48	-0.7
57,457	+		Psyr_0057	0.48	-0.2
57,457	+		Psyr_0057	0.48	+0.3
57,457	+		Psyr_0057	0.48	-0.3
57,458	-		Psyr_0057	0.48	+2.3
57,458	-		Psyr_0057	0.48	-0.9
57,458	-		Psyr_0057	0.48	-0.3
57,458	-		Psyr_0057	0.48	+1.0
57,485	+		Psyr_0057	0.66	+0.6
57,485	+		Psyr_0057	0.66	-0.6
57,512	+		Psyr_0057	0.84	+1.0
57,513	-		Psyr_0057	0.84	+0.3
57,513	-		Psyr_0057	0.84	+0.1
57,523	+				+0.5
57,523	+				-0.5
57,523	+				-0.7
57,532	+				-0.5
57,532	+				+2.3
57,533	-				+0.0
57,533	-				+2.0
57,533	-				+0.5
57,533	-				-0.2
57,533	-				+0.2
57,533	-				-1.0
57,624	+		Psyr_0058	0.16	+0.5
57,624	+		Psyr_0058	0.16	-0.5
57,625	-		Psyr_0058	0.16	-0.1
57,625	-		Psyr_0058	0.16	+1.3
57,625	-		Psyr_0058	0.16	+0.6
57,625	-		Psyr_0058	0.16	+0.0
57,625	-		Psyr_0058	0.16	+0.0
57,625	-		Psyr_0058	0.16	-0.9
57,625	-		Psyr_0058	0.16	-1.9
57,625	-		Psyr_0058	0.16	-0.1
57,658	-		Psyr_0058	0.22	+0.1
57,723	+		Psyr_0058	0.34	+0.5
57,723	+		Psyr_0058	0.34	-1.0
57,723	+		Psyr_0058	0.34	-2.8
57,724	-		Psyr_0058	0.35	+0.5
57,724	-		Psyr_0058	0.35	-0.2
57,724	-		Psyr_0058	0.35	+0.8
57,746	-		Psyr_0058	0.39	-1.5
57,746	-		Psyr_0058	0.39	-0.8
57,976	+		Psyr_0058	0.82	-0.4
57,977	-		Psyr_0058	0.83	-0.7
57,992	+		Psyr_0058	0.85	+0.3
57,992	+		Psyr_0058	0.85	-1.1
57,993	-		Psyr_0058	0.86	-0.1
57,993	-		Psyr_0058	0.86	-0.8
57,993	-		Psyr_0058	0.86	-1.5
58,064	+				+0.2
58,064	+				-0.6
58,064	+				+0.3
58,064	+				-0.5
58,064	+				-0.1
58,064	+				-1.7
58,064	+				+0.4
58,064	+				-0.4
58,064	+				-0.5
58,064	+				+1.3
58,064	+				+0.3
58,065	-				+0.2
58,065	-				+0.6
58,065	-				+0.1
58,065	-				-2.2
58,065	-				-0.7
58,065	-				+0.3
58,065	-				+0.7
58,065	-				+0.3
58,065	-				+0.3
58,065	-				-0.1
58,065	-				+0.1
58,065	-				-0.5
58,065	-				-0.7
58,065	-				-0.0
58,065	-				-0.5
58,065	-				+0.7
58,065	-				+0.8
58,065	-				-0.0
58,099	-				+0.2
58,194	+				+0.1
58,194	+				-2.9
58,194	+				+0.3
58,194	+				-1.1
58,195	-				+1.3
58,195	-				+0.5
58,195	-				-0.2
58,206	+				+2.9
58,206	+				+1.5
58,206	+				-0.3
58,206	+				+0.1
58,497	+		Psyr_0059	0.17	-2.8
58,497	+		Psyr_0059	0.17	-0.2
58,497	+		Psyr_0059	0.17	+2.1
58,497	+		Psyr_0059	0.17	+0.9
58,497	+		Psyr_0059	0.17	-1.9
58,497	+		Psyr_0059	0.17	-0.9
58,497	+		Psyr_0059	0.17	+0.5
58,497	+		Psyr_0059	0.17	+0.9
58,497	+		Psyr_0059	0.17	-1.1
58,498	-		Psyr_0059	0.17	-0.5
58,498	-		Psyr_0059	0.17	+0.3
58,498	-		Psyr_0059	0.17	+2.0
58,498	-		Psyr_0059	0.17	+1.9
58,498	-		Psyr_0059	0.17	-0.6
58,498	-		Psyr_0059	0.17	-0.5
58,498	-		Psyr_0059	0.17	+0.2
58,498	-		Psyr_0059	0.17	+0.7
58,498	-		Psyr_0059	0.17	-0.6
58,498	-		Psyr_0059	0.17	-1.1
58,498	-		Psyr_0059	0.17	-0.5
58,498	-		Psyr_0059	0.17	-0.4
58,498	-		Psyr_0059	0.17	+0.8
58,601	+		Psyr_0059	0.25	+0.9
58,625	+		Psyr_0059	0.27	-0.9
58,625	+		Psyr_0059	0.27	-0.7
58,625	+		Psyr_0059	0.27	-1.3
58,625	+		Psyr_0059	0.27	+1.0
58,625	+		Psyr_0059	0.27	+0.9
58,700	+		Psyr_0059	0.33	-1.9
58,938	-		Psyr_0059	0.52	-0.0
58,938	-		Psyr_0059	0.52	-1.0
59,165	+		Psyr_0059	0.71	-0.7
59,165	+		Psyr_0059	0.71	-0.5
59,165	+		Psyr_0059	0.71	-0.7
59,165	+		Psyr_0059	0.71	+2.3
59,165	+		Psyr_0059	0.71	-0.3
59,166	-		Psyr_0059	0.71	-0.9
59,166	-		Psyr_0059	0.71	-1.2
59,166	-		Psyr_0059	0.71	+0.3
59,166	-		Psyr_0059	0.71	+1.1
59,166	-		Psyr_0059	0.71	+0.7
59,166	-		Psyr_0059	0.71	+0.6
59,169	-		Psyr_0059	0.71	-0.7
59,169	-		Psyr_0059	0.71	+0.8
59,169	-		Psyr_0059	0.71	+0.4
59,269	+		Psyr_0059	0.79	+0.3
59,269	+		Psyr_0059	0.79	-0.9
59,269	+		Psyr_0059	0.79	+0.3
59,269	+		Psyr_0059	0.79	-1.7
59,269	+		Psyr_0059	0.79	-1.1
59,269	+		Psyr_0059	0.79	+1.7
59,269	+		Psyr_0059	0.79	+2.6
59,269	+		Psyr_0059	0.79	+1.3
59,270	-		Psyr_0059	0.79	-0.5
59,270	-		Psyr_0059	0.79	+2.6
59,270	-		Psyr_0059	0.79	-0.2
59,270	-		Psyr_0059	0.79	-0.0
59,270	-		Psyr_0059	0.79	-0.0
59,270	-		Psyr_0059	0.79	+0.6
59,270	-		Psyr_0059	0.79	+2.6
59,270	-		Psyr_0059	0.79	+0.4
59,270	-		Psyr_0059	0.79	+0.9
59,270	-		Psyr_0059	0.79	-1.4
59,270	-		Psyr_0059	0.79	+0.0
59,448	-				+0.7
59,506	+				-0.1
59,506	+				-0.1
59,516	+				-0.6
59,516	+				-0.5
59,516	+				-1.4
59,516	+				-0.5
59,516	+				+0.7
59,516	+				+0.6
59,516	+				-0.7
59,516	+				-0.0
59,516	+				-0.9
59,516	+				-0.5
59,516	+				+0.7
59,516	+				-2.6
59,516	+				-1.0
59,516	+				+0.5
59,516	+				-0.4
59,517	-				-0.4
59,517	-				-1.0
59,517	-				-0.7
59,517	-				-0.2
59,517	-				+0.5
59,517	-				-0.3
59,517	-				-0.1
59,517	-				+1.3
59,517	-				+2.3
59,517	-				-0.7
59,517	-				+0.6
59,517	-				+0.4
59,517	-				-0.5
59,517	-				+0.1
59,587	+				-1.5
59,588	-				+0.6
59,887	+		Psyr_0060	0.31	+0.1
59,888	-		Psyr_0060	0.31	+0.4
59,888	-		Psyr_0060	0.31	-1.5
59,888	-		Psyr_0060	0.31	-1.6
60,003	+		Psyr_0060	0.41	-1.0
60,003	+		Psyr_0060	0.41	-2.7
60,003	+		Psyr_0060	0.41	+0.7
60,003	+		Psyr_0060	0.41	-0.9
60,004	-		Psyr_0060	0.41	+3.6
60,004	-		Psyr_0060	0.41	-0.3
60,004	-		Psyr_0060	0.41	-0.4
60,372	-		Psyr_0060	0.72	-0.6
60,372	-		Psyr_0060	0.72	-0.3