Experiment: H2 deepwell vitamin and casamino FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07965 and MMP_RS07970 overlap by 4 nucleotides MMP_RS07970 and MMP_RS07975 are separated by 138 nucleotides MMP_RS07975 and MMP_RS07980 are separated by 26 nucleotides MMP_RS07980 and MMP_RS07985 are separated by 195 nucleotides
MMP_RS07965: MMP_RS07965 - NADPH-dependent F420 reductase, at 1,503,803 to 1,504,474
_RS07965
MMP_RS07970: MMP_RS07970 - hypothetical protein, at 1,504,471 to 1,504,692
_RS07970
MMP_RS07975: MMP_RS07975 - signal recognition particle protein Srp54, at 1,504,831 to 1,506,183
_RS07975
MMP_RS07980: MMP_RS07980 - UbiX family flavin prenyltransferase, at 1,506,210 to 1,506,767
_RS07980
MMP_RS07985: MMP_RS07985 - nitroreductase family protein, at 1,506,963 to 1,507,565
_RS07985
Position (kb)
1504
1505
1506
1507 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1504.038 kb on + strand at 1504.092 kb on - strand at 1504.465 kb on + strand at 1504.472 kb on - strand at 1504.548 kb on - strand, within MMP_RS07970 at 1504.577 kb on + strand, within MMP_RS07970 at 1504.683 kb on - strand at 1504.724 kb on + strand at 1504.755 kb on + strand at 1504.781 kb on + strand at 1504.817 kb on + strand at 1504.817 kb on + strand at 1504.841 kb on - strand at 1504.841 kb on - strand at 1504.842 kb on + strand at 1505.287 kb on - strand at 1505.287 kb on - strand at 1505.341 kb on - strand at 1505.342 kb on + strand at 1505.368 kb on - strand at 1505.437 kb on - strand at 1505.630 kb on + strand at 1505.873 kb on + strand at 1506.040 kb on - strand at 1506.041 kb on + strand at 1506.183 kb on - strand at 1506.197 kb on - strand at 1506.198 kb on + strand at 1506.212 kb on + strand at 1506.231 kb on - strand at 1506.232 kb on + strand at 1506.295 kb on + strand at 1506.295 kb on + strand at 1506.586 kb on - strand at 1506.639 kb on + strand at 1506.788 kb on + strand at 1506.812 kb on - strand at 1506.817 kb on + strand at 1506.817 kb on + strand at 1506.818 kb on - strand at 1506.818 kb on - strand at 1506.818 kb on - strand at 1506.819 kb on + strand at 1506.819 kb on + strand at 1506.819 kb on + strand at 1506.819 kb on + strand at 1506.906 kb on + strand at 1506.911 kb on - strand at 1506.919 kb on + strand at 1506.924 kb on - strand at 1507.167 kb on - strand, within MMP_RS07985
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell vitamin and casamino FREE remove 1,504,038 + -3.0 1,504,092 - -2.4 1,504,465 + +1.1 1,504,472 - +0.7 1,504,548 - MMP_RS07970 0.35 +0.6 1,504,577 + MMP_RS07970 0.48 +1.0 1,504,683 - +0.8 1,504,724 + +1.3 1,504,755 + -2.3 1,504,781 + +1.2 1,504,817 + +0.5 1,504,817 + +0.3 1,504,841 - +0.9 1,504,841 - +0.2 1,504,842 + +0.3 1,505,287 - -1.3 1,505,287 - -3.2 1,505,341 - -2.8 1,505,342 + -1.3 1,505,368 - -3.3 1,505,437 - -1.8 1,505,630 + -1.4 1,505,873 + -1.9 1,506,040 - -3.7 1,506,041 + -2.8 1,506,183 - -3.4 1,506,197 - -0.9 1,506,198 + -3.6 1,506,212 + -1.6 1,506,231 - -0.5 1,506,232 + -2.1 1,506,295 + -1.2 1,506,295 + -3.6 1,506,586 - -3.3 1,506,639 + -4.8 1,506,788 + -2.2 1,506,812 - +0.7 1,506,817 + +1.9 1,506,817 + -0.5 1,506,818 - +1.1 1,506,818 - +0.5 1,506,818 - +0.7 1,506,819 + +1.8 1,506,819 + +0.2 1,506,819 + +0.3 1,506,819 + +0.6 1,506,906 + +0.4 1,506,911 - +0.5 1,506,919 + +1.2 1,506,924 - +1.2 1,507,167 - MMP_RS07985 0.34 +1.3
Or see this region's nucleotide sequence