Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07975

Experiment: H2 deepwell vitamin and casamino FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07965 and MMP_RS07970 overlap by 4 nucleotidesMMP_RS07970 and MMP_RS07975 are separated by 138 nucleotidesMMP_RS07975 and MMP_RS07980 are separated by 26 nucleotidesMMP_RS07980 and MMP_RS07985 are separated by 195 nucleotides MMP_RS07965: MMP_RS07965 - NADPH-dependent F420 reductase, at 1,503,803 to 1,504,474 _RS07965 MMP_RS07970: MMP_RS07970 - hypothetical protein, at 1,504,471 to 1,504,692 _RS07970 MMP_RS07975: MMP_RS07975 - signal recognition particle protein Srp54, at 1,504,831 to 1,506,183 _RS07975 MMP_RS07980: MMP_RS07980 - UbiX family flavin prenyltransferase, at 1,506,210 to 1,506,767 _RS07980 MMP_RS07985: MMP_RS07985 - nitroreductase family protein, at 1,506,963 to 1,507,565 _RS07985 Position (kb) 1504 1505 1506 1507Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1504.038 kb on + strandat 1504.092 kb on - strandat 1504.465 kb on + strandat 1504.472 kb on - strandat 1504.548 kb on - strand, within MMP_RS07970at 1504.577 kb on + strand, within MMP_RS07970at 1504.683 kb on - strandat 1504.724 kb on + strandat 1504.755 kb on + strandat 1504.781 kb on + strandat 1504.817 kb on + strandat 1504.817 kb on + strandat 1504.841 kb on - strandat 1504.841 kb on - strandat 1504.842 kb on + strandat 1505.287 kb on - strandat 1505.287 kb on - strandat 1505.341 kb on - strandat 1505.342 kb on + strandat 1505.368 kb on - strandat 1505.437 kb on - strandat 1505.630 kb on + strandat 1505.873 kb on + strandat 1506.040 kb on - strandat 1506.041 kb on + strandat 1506.183 kb on - strandat 1506.197 kb on - strandat 1506.198 kb on + strandat 1506.212 kb on + strandat 1506.231 kb on - strandat 1506.232 kb on + strandat 1506.295 kb on + strandat 1506.295 kb on + strandat 1506.586 kb on - strandat 1506.639 kb on + strandat 1506.788 kb on + strandat 1506.812 kb on - strandat 1506.817 kb on + strandat 1506.817 kb on + strandat 1506.818 kb on - strandat 1506.818 kb on - strandat 1506.818 kb on - strandat 1506.819 kb on + strandat 1506.819 kb on + strandat 1506.819 kb on + strandat 1506.819 kb on + strandat 1506.906 kb on + strandat 1506.911 kb on - strandat 1506.919 kb on + strandat 1506.924 kb on - strandat 1507.167 kb on - strand, within MMP_RS07985

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell vitamin and casamino FREE
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1,504,038 + -3.0
1,504,092 - -2.4
1,504,465 + +1.1
1,504,472 - +0.7
1,504,548 - MMP_RS07970 0.35 +0.6
1,504,577 + MMP_RS07970 0.48 +1.0
1,504,683 - +0.8
1,504,724 + +1.3
1,504,755 + -2.3
1,504,781 + +1.2
1,504,817 + +0.5
1,504,817 + +0.3
1,504,841 - +0.9
1,504,841 - +0.2
1,504,842 + +0.3
1,505,287 - -1.3
1,505,287 - -3.2
1,505,341 - -2.8
1,505,342 + -1.3
1,505,368 - -3.3
1,505,437 - -1.8
1,505,630 + -1.4
1,505,873 + -1.9
1,506,040 - -3.7
1,506,041 + -2.8
1,506,183 - -3.4
1,506,197 - -0.9
1,506,198 + -3.6
1,506,212 + -1.6
1,506,231 - -0.5
1,506,232 + -2.1
1,506,295 + -1.2
1,506,295 + -3.6
1,506,586 - -3.3
1,506,639 + -4.8
1,506,788 + -2.2
1,506,812 - +0.7
1,506,817 + +1.9
1,506,817 + -0.5
1,506,818 - +1.1
1,506,818 - +0.5
1,506,818 - +0.7
1,506,819 + +1.8
1,506,819 + +0.2
1,506,819 + +0.3
1,506,819 + +0.6
1,506,906 + +0.4
1,506,911 - +0.5
1,506,919 + +1.2
1,506,924 - +1.2
1,507,167 - MMP_RS07985 0.34 +1.3

Or see this region's nucleotide sequence