Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03695

Experiment: H2 deepwell vitamin and casamino FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03690 and MMP_RS03695 are separated by 4 nucleotidesMMP_RS03695 and MMP_RS03700 are separated by 12 nucleotides MMP_RS03690: MMP_RS03690 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 695,370 to 696,470 _RS03690 MMP_RS03695: MMP_RS03695 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 696,475 to 697,758 _RS03695 MMP_RS03700: MMP_RS03700 - sodium:proton antiporter, at 697,771 to 699,024 _RS03700 Position (kb) 696 697 698Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 695.623 kb on + strandat 695.623 kb on + strandat 695.625 kb on + strandat 695.786 kb on - strandat 695.790 kb on - strandat 695.791 kb on + strandat 695.795 kb on - strandat 695.795 kb on - strandat 695.795 kb on - strandat 695.978 kb on - strandat 695.978 kb on - strandat 695.983 kb on + strandat 696.189 kb on + strandat 696.189 kb on + strandat 696.756 kb on - strandat 696.787 kb on + strandat 696.857 kb on + strandat 696.884 kb on - strandat 696.973 kb on - strandat 696.974 kb on + strandat 697.175 kb on + strandat 697.317 kb on + strandat 697.372 kb on + strandat 697.382 kb on + strandat 697.402 kb on - strandat 697.556 kb on + strandat 697.614 kb on - strandat 697.889 kb on - strandat 697.932 kb on - strand, within MMP_RS03700at 697.940 kb on - strand, within MMP_RS03700at 697.941 kb on + strand, within MMP_RS03700at 698.235 kb on - strand, within MMP_RS03700at 698.256 kb on + strand, within MMP_RS03700at 698.256 kb on + strand, within MMP_RS03700at 698.257 kb on - strand, within MMP_RS03700at 698.363 kb on + strand, within MMP_RS03700at 698.363 kb on + strand, within MMP_RS03700at 698.551 kb on - strand, within MMP_RS03700at 698.616 kb on - strand, within MMP_RS03700at 698.617 kb on + strand, within MMP_RS03700at 698.617 kb on + strand, within MMP_RS03700at 698.617 kb on + strand, within MMP_RS03700at 698.654 kb on - strand, within MMP_RS03700at 698.658 kb on - strand, within MMP_RS03700at 698.676 kb on - strand, within MMP_RS03700at 698.676 kb on - strand, within MMP_RS03700at 698.677 kb on + strand, within MMP_RS03700at 698.690 kb on - strand, within MMP_RS03700at 698.690 kb on - strand, within MMP_RS03700at 698.691 kb on + strand, within MMP_RS03700at 698.691 kb on + strand, within MMP_RS03700at 698.691 kb on + strand, within MMP_RS03700at 698.691 kb on + strand, within MMP_RS03700at 698.692 kb on - strand, within MMP_RS03700at 698.693 kb on + strand, within MMP_RS03700at 698.693 kb on + strand, within MMP_RS03700at 698.694 kb on - strand, within MMP_RS03700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell vitamin and casamino FREE
remove
695,623 + -2.8
695,623 + -2.3
695,625 + -2.3
695,786 - -2.9
695,790 - -3.5
695,791 + -0.9
695,795 - -2.8
695,795 - -1.8
695,795 - -0.9
695,978 - -2.7
695,978 - -1.5
695,983 + -3.2
696,189 + -2.9
696,189 + -3.1
696,756 - -2.7
696,787 + -1.9
696,857 + -1.1
696,884 - -1.5
696,973 - -1.7
696,974 + -1.5
697,175 + -2.2
697,317 + -2.6
697,372 + -0.7
697,382 + -0.9
697,402 - -2.7
697,556 + -0.3
697,614 - -3.0
697,889 - -3.5
697,932 - MMP_RS03700 0.13 -1.7
697,940 - MMP_RS03700 0.13 -2.0
697,941 + MMP_RS03700 0.14 -1.9
698,235 - MMP_RS03700 0.37 -4.0
698,256 + MMP_RS03700 0.39 -3.3
698,256 + MMP_RS03700 0.39 -2.3
698,257 - MMP_RS03700 0.39 -1.8
698,363 + MMP_RS03700 0.47 -2.5
698,363 + MMP_RS03700 0.47 -3.6
698,551 - MMP_RS03700 0.62 -4.8
698,616 - MMP_RS03700 0.67 -2.0
698,617 + MMP_RS03700 0.67 -4.0
698,617 + MMP_RS03700 0.67 -3.8
698,617 + MMP_RS03700 0.67 -2.7
698,654 - MMP_RS03700 0.70 -2.8
698,658 - MMP_RS03700 0.71 -5.4
698,676 - MMP_RS03700 0.72 -3.9
698,676 - MMP_RS03700 0.72 -4.0
698,677 + MMP_RS03700 0.72 -3.8
698,690 - MMP_RS03700 0.73 -1.8
698,690 - MMP_RS03700 0.73 -4.3
698,691 + MMP_RS03700 0.73 -4.2
698,691 + MMP_RS03700 0.73 -4.6
698,691 + MMP_RS03700 0.73 -2.6
698,691 + MMP_RS03700 0.73 -3.8
698,692 - MMP_RS03700 0.73 -3.6
698,693 + MMP_RS03700 0.74 -3.0
698,693 + MMP_RS03700 0.74 -2.6
698,694 - MMP_RS03700 0.74 -3.0

Or see this region's nucleotide sequence