Strain Fitness in Pantoea sp. MT58 around IAI47_14400

Experiment: nitrogen source nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 20mM
3,038,772	-				+0.1
3,038,812	+		IAI47_14390	0.12	+0.0
3,038,812	+		IAI47_14390	0.12	-0.1
3,038,813	-		IAI47_14390	0.13	+0.3
3,038,813	-		IAI47_14390	0.13	-0.7
3,038,813	-		IAI47_14390	0.13	+2.0
3,038,813	-		IAI47_14390	0.13	+0.9
3,038,847	+		IAI47_14390	0.20	-0.7
3,038,848	-		IAI47_14390	0.20	-0.0
3,038,877	-		IAI47_14390	0.27	-1.3
3,038,970	+		IAI47_14390	0.48	-0.1
3,039,053	+		IAI47_14390	0.66	-0.2
3,039,053	+		IAI47_14390	0.66	-1.1
3,039,053	+		IAI47_14390	0.66	-1.7
3,039,053	+		IAI47_14390	0.66	+0.7
3,039,053	+		IAI47_14390	0.66	-0.5
3,039,054	-		IAI47_14390	0.66	-2.0
3,039,054	-		IAI47_14390	0.66	-0.7
3,039,054	-		IAI47_14390	0.66	-1.1
3,039,054	-		IAI47_14390	0.66	-0.4
3,039,054	-		IAI47_14390	0.66	+0.3
3,039,188	+				+0.6
3,039,189	-				+0.3
3,039,223	+				+0.7
3,039,224	-				+0.3
3,039,298	+		IAI47_14395	0.26	-1.0
3,039,299	-		IAI47_14395	0.27	+0.1
3,039,299	-		IAI47_14395	0.27	-1.6
3,039,299	-		IAI47_14395	0.27	-0.8
3,039,299	-		IAI47_14395	0.27	+0.6
3,039,446	+		IAI47_14395	0.63	-0.6
3,039,446	+		IAI47_14395	0.63	+0.3
3,039,447	-		IAI47_14395	0.63	+1.4
3,039,447	-		IAI47_14395	0.63	+0.4
3,039,447	-		IAI47_14395	0.63	+1.0
3,039,455	+		IAI47_14395	0.65	+1.0
3,039,455	+		IAI47_14395	0.65	+0.2
3,039,456	-		IAI47_14395	0.65	+0.4
3,039,456	-		IAI47_14395	0.65	-0.8
3,039,456	-		IAI47_14395	0.65	+1.5
3,039,456	-		IAI47_14395	0.65	-0.1
3,039,456	-		IAI47_14395	0.65	+2.4
3,039,478	+		IAI47_14395	0.71	-0.7
3,039,479	-		IAI47_14395	0.71	-0.7
3,039,479	-		IAI47_14395	0.71	-2.6
3,039,480	+		IAI47_14395	0.71	-1.3
3,039,480	+		IAI47_14395	0.71	+2.4
3,039,480	+		IAI47_14395	0.71	+0.8
3,039,480	+		IAI47_14395	0.71	-0.8
3,039,480	+		IAI47_14395	0.71	-0.3
3,039,480	+		IAI47_14395	0.71	-0.1
3,039,481	-		IAI47_14395	0.72	+0.2
3,039,481	-		IAI47_14395	0.72	-0.7
3,039,481	-		IAI47_14395	0.72	-1.0
3,039,481	-		IAI47_14395	0.72	+0.1
3,039,481	-		IAI47_14395	0.72	+0.4
3,039,481	-		IAI47_14395	0.72	+0.7
3,039,481	-		IAI47_14395	0.72	+0.9
3,039,481	-		IAI47_14395	0.72	+0.1
3,039,490	-		IAI47_14395	0.74	-1.4
3,039,537	+		IAI47_14395	0.85	+1.7
3,039,637	+				+0.0
3,039,637	+				+0.4
3,039,637	+				-1.5
3,039,637	+				-0.2
3,039,638	-				+1.1
3,039,638	-				-1.1
3,039,638	-				+0.4
3,039,638	-				+0.1
3,039,638	-				+1.2
3,039,677	-				-0.9
3,039,692	+				+0.7
3,039,692	+				+0.1
3,039,692	+				-0.6
3,039,692	+				-1.8
3,039,693	-				+0.4
3,039,693	-				+0.0
3,039,693	-				-0.9
3,039,693	-				+0.1
3,039,693	-				+0.3
3,039,693	-				-0.6
3,039,704	+				-1.1
3,039,704	+				-0.4
3,039,704	+				+1.6
3,039,704	+				+0.3
3,039,704	+				-1.2
3,039,704	+				-3.0
3,039,704	+				+1.1
3,039,705	-				+0.5
3,039,727	+				+0.1
3,039,727	+				+0.8
3,039,728	-				-0.7
3,039,728	-				+0.7
3,039,854	+				+2.0
3,039,855	-				+1.3
3,040,001	+		IAI47_14400	0.12	+0.9
3,040,001	+		IAI47_14400	0.12	+0.7
3,040,002	-		IAI47_14400	0.12	+3.2
3,040,002	-		IAI47_14400	0.12	-0.2
3,040,150	+		IAI47_14400	0.18	-0.0
3,040,151	-		IAI47_14400	0.18	+1.2
3,040,151	-		IAI47_14400	0.18	+1.1
3,040,151	-		IAI47_14400	0.18	+1.3
3,040,151	-		IAI47_14400	0.18	+1.7
3,040,373	-		IAI47_14400	0.27	-0.3
3,040,410	+		IAI47_14400	0.29	+0.6
3,040,457	+		IAI47_14400	0.30	-0.0
3,040,494	+		IAI47_14400	0.32	-0.2
3,040,494	+		IAI47_14400	0.32	+1.1
3,040,494	+		IAI47_14400	0.32	+1.0
3,040,494	+		IAI47_14400	0.32	+1.2
3,040,494	+		IAI47_14400	0.32	+0.1
3,040,495	-		IAI47_14400	0.32	+0.2
3,040,495	-		IAI47_14400	0.32	-0.5
3,040,495	-		IAI47_14400	0.32	+0.4
3,040,502	+		IAI47_14400	0.32	+1.9
3,040,502	+		IAI47_14400	0.32	+1.3
3,040,503	-		IAI47_14400	0.32	+0.6
3,040,503	-		IAI47_14400	0.32	-0.4
3,040,503	-		IAI47_14400	0.32	+0.7
3,040,551	+		IAI47_14400	0.34	-2.2
3,040,552	-		IAI47_14400	0.34	+0.4
3,040,552	-		IAI47_14400	0.34	+0.9
3,040,631	+		IAI47_14400	0.37	-1.1
3,040,631	+		IAI47_14400	0.37	+1.3
3,040,631	+		IAI47_14400	0.37	+0.2
3,040,631	+		IAI47_14400	0.37	-0.8
3,040,632	-		IAI47_14400	0.37	+0.7
3,040,632	-		IAI47_14400	0.37	+0.4
3,040,954	+		IAI47_14400	0.50	+1.7
3,041,003	+		IAI47_14400	0.52	-1.0
3,041,004	-		IAI47_14400	0.52	+0.1
3,041,004	-		IAI47_14400	0.52	-0.1
3,041,004	-		IAI47_14400	0.52	+0.4
3,041,004	-		IAI47_14400	0.52	+1.9
3,041,064	+		IAI47_14400	0.55	-0.8
3,041,064	+		IAI47_14400	0.55	+0.5
3,041,064	+		IAI47_14400	0.55	+0.1
3,041,065	-		IAI47_14400	0.55	+0.6
3,041,094	+		IAI47_14400	0.56	+0.1
3,041,094	+		IAI47_14400	0.56	+0.9
3,041,094	+		IAI47_14400	0.56	-0.3
3,041,094	+		IAI47_14400	0.56	-0.2
3,041,094	+		IAI47_14400	0.56	+0.2
3,041,094	+		IAI47_14400	0.56	+2.7
3,041,094	+		IAI47_14400	0.56	+0.4
3,041,095	-		IAI47_14400	0.56	+1.1
3,041,095	-		IAI47_14400	0.56	+0.8
3,041,095	-		IAI47_14400	0.56	+0.9
3,041,095	-		IAI47_14400	0.56	-0.7
3,041,095	-		IAI47_14400	0.56	-0.8
3,041,095	-		IAI47_14400	0.56	+1.4
3,041,095	-		IAI47_14400	0.56	+1.2
3,041,095	-		IAI47_14400	0.56	-0.0
3,041,095	-		IAI47_14400	0.56	+0.5
3,041,105	-		IAI47_14400	0.56	-1.6
3,041,105	-		IAI47_14400	0.56	-0.1
3,041,114	+		IAI47_14400	0.57	-0.1
3,041,114	+		IAI47_14400	0.57	+0.3
3,041,114	+		IAI47_14400	0.57	-0.1
3,041,115	-		IAI47_14400	0.57	+1.2
3,041,115	-		IAI47_14400	0.57	-0.8
3,041,126	+		IAI47_14400	0.57	+0.9
3,041,126	+		IAI47_14400	0.57	+1.9
3,041,127	-		IAI47_14400	0.57	-0.2
3,041,171	+		IAI47_14400	0.59	-0.7
3,041,172	-		IAI47_14400	0.59	+3.6
3,041,172	-		IAI47_14400	0.59	+1.4
3,041,172	-		IAI47_14400	0.59	+1.6
3,041,267	+		IAI47_14400	0.63	-0.1
3,041,268	-		IAI47_14400	0.63	+2.4
3,041,277	-		IAI47_14400	0.63	+1.0
3,041,277	-		IAI47_14400	0.63	+0.9
3,041,292	-		IAI47_14400	0.64	+0.5
3,041,437	+		IAI47_14400	0.69	-1.8
3,041,450	+		IAI47_14400	0.70	-2.0
3,041,451	-		IAI47_14400	0.70	-0.9
3,041,455	+		IAI47_14400	0.70	+1.9
3,041,456	-		IAI47_14400	0.70	+0.3
3,041,462	+		IAI47_14400	0.70	+0.6
3,041,478	-		IAI47_14400	0.71	+0.6
3,041,507	+		IAI47_14400	0.72	+1.0
3,041,521	+		IAI47_14400	0.73	+0.1
3,041,522	-		IAI47_14400	0.73	+0.9
3,041,522	-		IAI47_14400	0.73	+0.3
3,041,599	+		IAI47_14400	0.76	-0.0
3,041,600	-		IAI47_14400	0.76	+0.9
3,041,600	-		IAI47_14400	0.76	+0.7
3,041,600	-		IAI47_14400	0.76	+0.8
3,041,620	+		IAI47_14400	0.77	+0.6
3,041,708	+		IAI47_14400	0.80	-0.1
3,041,708	+		IAI47_14400	0.80	+0.7
3,041,708	+		IAI47_14400	0.80	+0.4
3,041,708	+		IAI47_14400	0.80	+1.0
3,041,708	+		IAI47_14400	0.80	-0.4
3,041,708	+		IAI47_14400	0.80	-0.1
3,041,709	-		IAI47_14400	0.80	-0.1
3,041,821	+		IAI47_14400	0.85	+0.5
3,041,821	+		IAI47_14400	0.85	-0.6
3,041,822	-		IAI47_14400	0.85	+3.1
3,041,822	-		IAI47_14400	0.85	+0.1
3,041,861	+		IAI47_14400	0.86	+0.3
3,041,861	+		IAI47_14400	0.86	+0.6
3,041,861	+		IAI47_14400	0.86	+0.7
3,041,862	-		IAI47_14400	0.86	-1.7
3,041,862	-		IAI47_14400	0.86	+2.2
3,041,948	+		IAI47_14400	0.90	+1.2
3,041,949	-		IAI47_14400	0.90	+1.0
3,041,949	-		IAI47_14400	0.90	+1.3
3,041,949	-		IAI47_14400	0.90	-1.9
3,041,949	-		IAI47_14400	0.90	+2.1
3,041,949	-		IAI47_14400	0.90	+1.3
3,041,954	-		IAI47_14400	0.90	-0.1
3,041,954	-		IAI47_14400	0.90	-1.5
3,042,044	+				+1.2
3,042,044	+				+1.0
3,042,044	+				+0.4
3,042,045	-				+1.3
3,042,045	-				-0.9
3,042,045	-				+1.1
3,042,048	+				-1.1
3,042,048	+				+0.2
3,042,048	+				+1.3
3,042,048	+				+0.3
3,042,049	-				+2.9
3,042,050	+				+2.3
3,042,050	+				+1.2
3,042,051	-				+2.3
3,042,088	-				+0.1
3,042,102	-				-1.1
3,042,102	-				+1.2
3,042,111	-				-1.0
3,042,149	+				-0.3
3,042,149	+				+0.9
3,042,149	+				+0.9
3,042,149	+				+1.1
3,042,150	-				+1.9
3,042,150	-				+0.9
3,042,150	-				-2.2
3,042,150	-				+0.9
3,042,151	+				-2.1
3,042,152	-				+1.9
3,042,204	+				+0.3
3,042,205	-				+1.4
3,042,245	+				+0.1
3,042,246	-				-0.8
3,042,312	+				-1.5
3,042,473	+		IAI47_14405	0.24	-0.5
3,042,473	+		IAI47_14405	0.24	-0.3
3,042,474	-		IAI47_14405	0.25	-0.7
3,042,474	-		IAI47_14405	0.25	-0.7
3,042,474	-		IAI47_14405	0.25	-1.0
3,042,489	+		IAI47_14405	0.26	+0.1
3,042,489	+		IAI47_14405	0.26	-0.0
3,042,489	+		IAI47_14405	0.26	-0.3
3,042,490	-		IAI47_14405	0.26	+1.0
3,042,490	-		IAI47_14405	0.26	-1.9
3,042,490	-		IAI47_14405	0.26	+1.1
3,042,490	-		IAI47_14405	0.26	-0.2
3,042,558	+				-0.5
3,042,558	+		IAI47_14405	0.35	+1.5
3,042,558	+		IAI47_14405	0.35	+1.3
3,042,559	-		IAI47_14405	0.35	+0.1
3,042,559	-		IAI47_14405	0.35	+0.6
3,042,559	-		IAI47_14405	0.35	+0.5
3,042,650	+		IAI47_14405	0.46	+0.5
3,042,650	+		IAI47_14405	0.46	-0.8
3,042,650	+		IAI47_14405	0.46	-1.7
3,042,650	+		IAI47_14405	0.46	-1.9
3,042,651	-		IAI47_14405	0.47	+1.7
3,042,651	-		IAI47_14405	0.47	+0.3
3,042,691	+		IAI47_14405	0.51	-0.1
3,042,692	-		IAI47_14405	0.52	+1.0
3,042,692	-		IAI47_14405	0.52	-0.8
3,042,692	-		IAI47_14405	0.52	+0.2
3,042,703	+		IAI47_14405	0.53	-1.1
3,042,703	+		IAI47_14405	0.53	-1.7
3,042,804	+		IAI47_14405	0.66	-0.1
3,042,804	+		IAI47_14405	0.66	+0.6
3,042,804	+		IAI47_14405	0.66	+0.7
3,042,805	-		IAI47_14405	0.66	+2.2
3,042,815	+		IAI47_14405	0.67	+2.7
3,042,815	+		IAI47_14405	0.67	+1.7
3,042,816	-		IAI47_14405	0.67	+0.2
3,042,816	-		IAI47_14405	0.67	+0.4
3,042,841	-		IAI47_14405	0.70	+0.6
3,042,841	-		IAI47_14405	0.70	-0.4
3,042,841	-		IAI47_14405	0.70	-1.0
3,042,841	-		IAI47_14405	0.70	-2.3
3,042,841	-		IAI47_14405	0.70	+0.9
3,042,909	+		IAI47_14405	0.79	+1.3
3,042,909	+		IAI47_14405	0.79	-1.2
3,042,928	-		IAI47_14405	0.81	-0.4
3,042,945	+		IAI47_14405	0.83	-0.6
3,042,945	+		IAI47_14405	0.83	+1.2
3,042,946	-		IAI47_14405	0.83	-0.2
3,042,946	-		IAI47_14405	0.83	+0.9
3,042,946	-		IAI47_14405	0.83	+0.8
3,042,946	-		IAI47_14405	0.83	+0.5
3,042,946	-		IAI47_14405	0.83	-0.3
3,042,946	-		IAI47_14405	0.83	+0.2
3,043,009	+				+0.9
3,043,009	+				+0.9
3,043,010	-				+0.2
3,043,010	-				-0.2
3,043,010	-				-0.9
3,043,010	-				+1.5
3,043,010	-				-0.6
3,043,039	+				-1.2
3,043,039	+				-2.8
3,043,040	-				+0.9
3,043,040	-				+0.1
3,043,040	-				-1.1
3,043,050	+				+0.0
3,043,050	+				-1.3
3,043,050	+				-0.3
3,043,050	+				-0.3
3,043,050	+				-0.8
3,043,051	-				-1.7
3,043,051	-				-0.8
3,043,051	-				-1.1
3,043,129	+				+0.9