Strain Fitness in Pantoea sp. MT58 around IAI47_11190

Experiment: nitrogen source nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 20mM
2,364,236	+		IAI47_11185	0.55	-2.5
2,364,257	+		IAI47_11185	0.57	-1.9
2,364,268	+		IAI47_11185	0.57	-3.1
2,364,268	+		IAI47_11185	0.57	-2.1
2,364,268	+		IAI47_11185	0.57	-2.0
2,364,268	+		IAI47_11185	0.57	-1.1
2,364,269	-		IAI47_11185	0.57	-1.5
2,364,271	+		IAI47_11185	0.58	-3.2
2,364,281	+		IAI47_11185	0.58	-3.2
2,364,281	+		IAI47_11185	0.58	-2.9
2,364,281	+		IAI47_11185	0.58	-0.1
2,364,281	+		IAI47_11185	0.58	-2.3
2,364,282	-		IAI47_11185	0.59	-1.5
2,364,282	-		IAI47_11185	0.59	-1.7
2,364,282	-		IAI47_11185	0.59	-1.3
2,364,282	-		IAI47_11185	0.59	+0.8
2,364,282	-		IAI47_11185	0.59	+0.8
2,364,282	-		IAI47_11185	0.59	-0.7
2,364,282	-		IAI47_11185	0.59	-1.5
2,364,282	-		IAI47_11185	0.59	-2.1
2,364,282	-		IAI47_11185	0.59	+0.5
2,364,305	+		IAI47_11185	0.60	-1.9
2,364,305	+		IAI47_11185	0.60	-3.9
2,364,305	+		IAI47_11185	0.60	-2.1
2,364,305	+		IAI47_11185	0.60	-1.8
2,364,305	+		IAI47_11185	0.60	-1.3
2,364,305	+		IAI47_11185	0.60	-1.5
2,364,305	+		IAI47_11185	0.60	-3.1
2,364,305	+		IAI47_11185	0.60	-3.6
2,364,305	+		IAI47_11185	0.60	+0.1
2,364,306	-		IAI47_11185	0.60	-0.9
2,364,306	-		IAI47_11185	0.60	-3.2
2,364,306	-		IAI47_11185	0.60	-1.4
2,364,306	-		IAI47_11185	0.60	-2.8
2,364,306	-		IAI47_11185	0.60	-0.7
2,364,484	+		IAI47_11185	0.75	-0.8
2,364,484	+		IAI47_11185	0.75	-2.4
2,364,484	+		IAI47_11185	0.75	-2.4
2,364,485	-		IAI47_11185	0.75	+1.1
2,364,485	-		IAI47_11185	0.75	-0.7
2,364,485	-		IAI47_11185	0.75	-2.1
2,364,485	-		IAI47_11185	0.75	-3.3
2,364,485	-		IAI47_11185	0.75	-2.8
2,364,485	-		IAI47_11185	0.75	-1.3
2,364,485	-		IAI47_11185	0.75	-1.3
2,364,485	-		IAI47_11185	0.75	-2.5
2,364,497	-		IAI47_11185	0.76	-1.7
2,364,589	+		IAI47_11185	0.83	-3.6
2,364,590	-		IAI47_11185	0.83	-1.6
2,364,590	-		IAI47_11185	0.83	-2.6
2,364,590	-		IAI47_11185	0.83	-3.3
2,364,641	+		IAI47_11185	0.87	+0.5
2,364,650	+		IAI47_11185	0.88	-3.3
2,364,651	-		IAI47_11185	0.88	-3.1
2,364,651	-		IAI47_11185	0.88	-3.5
2,364,714	+				-2.0
2,364,913	+				-3.1
2,364,914	-				+0.6
2,364,914	-				-0.3
2,364,914	-				-0.0
2,364,922	+				-1.1
2,365,050	+				-3.1
2,365,050	+				-1.3
2,365,050	+				-2.4
2,365,051	-				-1.1
2,365,051	-				-3.6
2,365,065	-				-0.8
2,365,122	+				-3.0
2,365,122	+				-3.3
2,365,385	+		IAI47_11190	0.27	-3.3
2,365,385	+		IAI47_11190	0.27	-2.1
2,365,385	+		IAI47_11190	0.27	-1.5
2,365,385	+		IAI47_11190	0.27	-3.4
2,365,386	-		IAI47_11190	0.27	-0.8
2,365,386	-		IAI47_11190	0.27	-3.5
2,365,386	-		IAI47_11190	0.27	-2.1
2,365,386	-		IAI47_11190	0.27	-1.7
2,365,386	-		IAI47_11190	0.27	-3.6
2,365,386	-		IAI47_11190	0.27	-3.2
2,365,477	-		IAI47_11190	0.34	-4.0
2,365,477	-		IAI47_11190	0.34	-1.8
2,365,716	+		IAI47_11190	0.54	-2.5
2,365,717	-		IAI47_11190	0.54	-2.2
2,365,800	+		IAI47_11190	0.61	-2.5
2,365,800	+		IAI47_11190	0.61	-2.4
2,365,801	-		IAI47_11190	0.61	-1.1
2,365,801	-		IAI47_11190	0.61	+0.5
2,365,801	-		IAI47_11190	0.61	-2.1
2,365,801	-		IAI47_11190	0.61	-1.8
2,365,875	+		IAI47_11190	0.67	-3.5
2,365,875	+		IAI47_11190	0.67	-0.8
2,365,876	-		IAI47_11190	0.67	-3.2
2,365,876	-		IAI47_11190	0.67	-2.5
2,365,876	-		IAI47_11190	0.67	-0.5
2,365,879	+		IAI47_11190	0.67	-2.8
2,365,879	+		IAI47_11190	0.67	-1.4
2,365,879	+		IAI47_11190	0.67	-2.5
2,365,880	-		IAI47_11190	0.67	-1.7
2,365,880	-		IAI47_11190	0.67	-2.0
2,365,880	-		IAI47_11190	0.67	-1.0
2,365,880	-		IAI47_11190	0.67	-1.5
2,365,890	+		IAI47_11190	0.68	-0.5
2,365,891	-		IAI47_11190	0.68	-4.1
2,365,963	+		IAI47_11190	0.74	-1.7
2,365,963	+		IAI47_11190	0.74	-1.5
2,365,964	-		IAI47_11190	0.74	-1.3
2,366,013	+		IAI47_11190	0.78	-1.8
2,366,233	-				-3.1
2,366,238	+				-2.8
2,366,271	+				-2.8
2,366,360	-				+0.1
2,366,375	+				+0.7
2,366,376	-				+1.5
2,366,376	-				+0.5
2,366,378	+				-0.5
2,366,379	-				+2.2
2,366,379	-				-2.8
2,366,379	-				-0.6
2,366,379	-				-0.1
2,366,379	-				+0.7
2,366,379	-				-1.8
2,366,421	+				+0.9
2,366,451	-				+0.5
2,366,518	-				-0.6
2,366,521	+				-0.4
2,366,521	+				+0.3
2,366,521	+				-0.3
2,366,521	+				-0.5
2,366,522	-				+0.2
2,366,522	-				-0.8
2,366,526	+				-0.7
2,366,527	-				-2.6
2,366,563	+				-0.1
2,366,564	-				-2.4
2,366,564	-				-2.3
2,366,564	-				+0.8
2,366,575	+				+0.4
2,366,622	+				+0.4
2,366,622	+				-0.7
2,366,623	-				+0.3
2,366,626	+				-0.4
2,366,631	+				+1.7
2,366,631	+				+0.3
2,366,632	-				-1.5
2,366,632	-				-1.5
2,366,742	+				+0.7
2,366,743	-				+0.9
2,366,807	+				-0.5
2,366,822	+		IAI47_11195	0.11	+2.2
2,366,852	+		IAI47_11195	0.17	-2.2
2,366,852	+		IAI47_11195	0.17	+0.3
2,366,873	+		IAI47_11195	0.22	+0.8
2,366,873	+		IAI47_11195	0.22	-0.2
2,366,955	+		IAI47_11195	0.38	-0.6
2,366,955	+		IAI47_11195	0.38	-1.7
2,366,955	+		IAI47_11195	0.38	-1.7
2,366,955	+		IAI47_11195	0.38	+0.2
2,366,956	-		IAI47_11195	0.39	-0.1
2,367,006	+		IAI47_11195	0.49	-0.1
2,367,006	+		IAI47_11195	0.49	-1.8
2,367,006	+		IAI47_11195	0.49	-1.3
2,367,034	+		IAI47_11195	0.54	+1.7
2,367,035	-		IAI47_11195	0.55	-2.9
2,367,099	+		IAI47_11195	0.68	-0.8
2,367,099	+		IAI47_11195	0.68	+0.3
2,367,100	-		IAI47_11195	0.68	+0.7
2,367,109	+		IAI47_11195	0.70	-0.3
2,367,135	+		IAI47_11195	0.75	+2.5
2,367,136	-		IAI47_11195	0.75	-1.5
2,367,275	+				-0.8
2,367,275	+				-2.4
2,367,275	+				-2.0