Strain Fitness in Pantoea sp. MT58 around IAI47_11180

Experiment: nitrogen source nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 20mM
2,361,729	+				-2.0
2,361,730	-				-3.2
2,361,730	-				-2.3
2,361,730	-				-1.7
2,361,826	+				-2.7
2,361,826	+				-2.8
2,361,826	+				-4.1
2,361,826	+				-4.1
2,361,826	+				-1.5
2,361,826	+				-0.1
2,361,826	+				-2.0
2,361,827	-				+0.3
2,361,827	-				-2.1
2,361,827	-				-1.7
2,361,827	-				-2.2
2,361,827	-				-2.6
2,361,827	-				-0.9
2,361,830	+				-2.9
2,361,830	+				-2.7
2,361,830	+				-2.3
2,361,831	-				-3.5
2,361,831	-				-3.5
2,361,831	-				-4.2
2,361,865	+				-0.9
2,361,865	+				-2.3
2,361,865	+				-2.7
2,361,865	+				-1.9
2,361,866	-				-2.6
2,361,889	+				-0.6
2,361,890	-				-2.5
2,362,026	+		IAI47_11175	0.20	-1.7
2,362,071	+		IAI47_11175	0.26	+1.9
2,362,071	+		IAI47_11175	0.26	-1.7
2,362,072	-		IAI47_11175	0.26	-0.1
2,362,072	-		IAI47_11175	0.26	-2.3
2,362,080	-		IAI47_11175	0.27	+0.5
2,362,085	+		IAI47_11175	0.28	-2.7
2,362,085	+		IAI47_11175	0.28	-3.3
2,362,086	-		IAI47_11175	0.28	+0.5
2,362,086	-		IAI47_11175	0.28	-2.7
2,362,086	-		IAI47_11175	0.28	+0.1
2,362,086	-		IAI47_11175	0.28	-0.1
2,362,086	-		IAI47_11175	0.28	-0.1
2,362,103	+		IAI47_11175	0.30	-4.0
2,362,334	+		IAI47_11175	0.59	-1.5
2,362,335	-		IAI47_11175	0.59	-1.0
2,362,335	-		IAI47_11175	0.59	-0.8
2,362,448	+		IAI47_11175	0.74	-2.0
2,362,461	+		IAI47_11175	0.75	-1.5
2,362,461	+		IAI47_11175	0.75	-3.4
2,362,483	-		IAI47_11175	0.78	-0.3
2,362,535	+		IAI47_11175	0.85	-1.2
2,362,535	+		IAI47_11175	0.85	-2.9
2,362,536	-		IAI47_11175	0.85	-2.6
2,362,536	-		IAI47_11175	0.85	-1.3
2,362,640	+				-1.1
2,362,640	+				-1.3
2,362,641	-				-1.9
2,362,641	-				-2.3
2,362,641	-				-2.0
2,362,641	-				-1.7
2,362,873	+		IAI47_11180	0.24	-0.9
2,362,873	+		IAI47_11180	0.24	-3.9
2,362,873	+		IAI47_11180	0.24	-2.5
2,362,873	+		IAI47_11180	0.24	-2.9
2,362,874	-		IAI47_11180	0.24	+0.5
2,362,945	+		IAI47_11180	0.32	-2.7
2,362,945	+		IAI47_11180	0.32	-1.3
2,362,945	+		IAI47_11180	0.32	-2.0
2,362,945	+		IAI47_11180	0.32	-3.7
2,362,945	+		IAI47_11180	0.32	-3.1
2,362,945	+		IAI47_11180	0.32	-2.3
2,362,946	-		IAI47_11180	0.32	+0.8
2,362,946	-		IAI47_11180	0.32	+0.3
2,362,967	+		IAI47_11180	0.34	-1.2
2,362,967	+		IAI47_11180	0.34	-2.8
2,363,151	+		IAI47_11180	0.56	-4.4
2,363,152	-		IAI47_11180	0.56	-1.0
2,363,157	+		IAI47_11180	0.56	-3.9
2,363,157	+		IAI47_11180	0.56	-2.2
2,363,157	+		IAI47_11180	0.56	-2.0
2,363,158	-		IAI47_11180	0.56	-1.7
2,363,242	+		IAI47_11180	0.66	-1.1
2,363,242	+		IAI47_11180	0.66	-1.1
2,363,242	+		IAI47_11180	0.66	-2.6
2,363,242	+		IAI47_11180	0.66	-1.3
2,363,242	+		IAI47_11180	0.66	-1.7
2,363,242	+		IAI47_11180	0.66	-1.1
2,363,283	-		IAI47_11180	0.71	-1.3
2,363,328	-		IAI47_11180	0.76	-1.1
2,363,479	+				+0.5
2,363,538	+				-1.2
2,363,538	+				-2.5
2,363,539	-				-2.0
2,363,551	+				-1.7
2,363,552	-				-2.3
2,363,578	+				-1.3
2,363,578	+				-1.3
2,363,686	+		IAI47_11185	0.11	-0.5
2,363,686	+		IAI47_11185	0.11	-1.7
2,363,686	+		IAI47_11185	0.11	-1.9
2,363,687	-		IAI47_11185	0.11	+2.1
2,363,687	-		IAI47_11185	0.11	-2.6
2,363,721	-		IAI47_11185	0.14	+0.7
2,363,725	+		IAI47_11185	0.14	-1.3
2,363,725	+		IAI47_11185	0.14	-1.7
2,363,725	+		IAI47_11185	0.14	-2.8
2,363,725	+		IAI47_11185	0.14	-1.7
2,363,872	+		IAI47_11185	0.26	-2.5
2,363,895	+		IAI47_11185	0.28	-2.2
2,363,895	+		IAI47_11185	0.28	-2.2
2,363,895	+		IAI47_11185	0.28	-1.4
2,363,961	-		IAI47_11185	0.33	-0.7
2,364,023	+		IAI47_11185	0.38	-1.9
2,364,024	-		IAI47_11185	0.38	+0.3
2,364,026	+		IAI47_11185	0.38	-0.8
2,364,026	+		IAI47_11185	0.38	-1.7
2,364,027	-		IAI47_11185	0.38	-2.9
2,364,027	-		IAI47_11185	0.38	-2.8
2,364,236	+		IAI47_11185	0.55	-2.5
2,364,257	+		IAI47_11185	0.57	-1.9
2,364,268	+		IAI47_11185	0.57	-3.1
2,364,268	+		IAI47_11185	0.57	-2.1
2,364,268	+		IAI47_11185	0.57	-2.0
2,364,268	+		IAI47_11185	0.57	-1.1
2,364,269	-		IAI47_11185	0.57	-1.5
2,364,271	+		IAI47_11185	0.58	-3.2
2,364,281	+		IAI47_11185	0.58	-3.2
2,364,281	+		IAI47_11185	0.58	-2.9
2,364,281	+		IAI47_11185	0.58	-0.1
2,364,281	+		IAI47_11185	0.58	-2.3
2,364,282	-		IAI47_11185	0.59	-1.5
2,364,282	-		IAI47_11185	0.59	-1.7
2,364,282	-		IAI47_11185	0.59	-1.3
2,364,282	-		IAI47_11185	0.59	+0.8
2,364,282	-		IAI47_11185	0.59	+0.8
2,364,282	-		IAI47_11185	0.59	-0.7
2,364,282	-		IAI47_11185	0.59	-1.5
2,364,282	-		IAI47_11185	0.59	-2.1
2,364,282	-		IAI47_11185	0.59	+0.5
2,364,305	+		IAI47_11185	0.60	-1.9
2,364,305	+		IAI47_11185	0.60	-3.9
2,364,305	+		IAI47_11185	0.60	-2.1
2,364,305	+		IAI47_11185	0.60	-1.8
2,364,305	+		IAI47_11185	0.60	-1.3
2,364,305	+		IAI47_11185	0.60	-1.5
2,364,305	+		IAI47_11185	0.60	-3.1
2,364,305	+		IAI47_11185	0.60	-3.6
2,364,305	+		IAI47_11185	0.60	+0.1
2,364,306	-		IAI47_11185	0.60	-0.9
2,364,306	-		IAI47_11185	0.60	-3.2
2,364,306	-		IAI47_11185	0.60	-1.4
2,364,306	-		IAI47_11185	0.60	-2.8
2,364,306	-		IAI47_11185	0.60	-0.7
2,364,484	+		IAI47_11185	0.75	-0.8
2,364,484	+		IAI47_11185	0.75	-2.4
2,364,484	+		IAI47_11185	0.75	-2.4
2,364,485	-		IAI47_11185	0.75	+1.1
2,364,485	-		IAI47_11185	0.75	-0.7
2,364,485	-		IAI47_11185	0.75	-2.1
2,364,485	-		IAI47_11185	0.75	-3.3
2,364,485	-		IAI47_11185	0.75	-2.8
2,364,485	-		IAI47_11185	0.75	-1.3
2,364,485	-		IAI47_11185	0.75	-1.3
2,364,485	-		IAI47_11185	0.75	-2.5
2,364,497	-		IAI47_11185	0.76	-1.7