Strain Fitness in Pantoea sp. MT58 around IAI47_11170

Experiment: nitrogen source nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 20mM
2,356,864	-		IAI47_11165	0.65	-0.1
2,356,868	+		IAI47_11165	0.65	-0.3
2,356,889	+		IAI47_11165	0.65	-3.2
2,356,889	+		IAI47_11165	0.65	-2.8
2,356,890	-		IAI47_11165	0.66	+1.5
2,356,890	-		IAI47_11165	0.66	+0.2
2,356,890	-		IAI47_11165	0.66	-1.0
2,356,890	-		IAI47_11165	0.66	-1.1
2,356,905	-		IAI47_11165	0.66	-0.7
2,356,905	-		IAI47_11165	0.66	-0.1
2,356,931	+		IAI47_11165	0.67	-3.8
2,356,932	-		IAI47_11165	0.67	-2.3
2,356,940	+		IAI47_11165	0.67	-2.4
2,356,940	+		IAI47_11165	0.67	+0.1
2,356,941	-		IAI47_11165	0.67	-0.1
2,356,952	+		IAI47_11165	0.68	-2.3
2,356,952	+		IAI47_11165	0.68	-2.3
2,356,952	+		IAI47_11165	0.68	-5.0
2,356,952	+		IAI47_11165	0.68	-2.9
2,356,953	-		IAI47_11165	0.68	+0.9
2,356,953	-		IAI47_11165	0.68	-1.1
2,356,953	-		IAI47_11165	0.68	-1.3
2,356,953	-		IAI47_11165	0.68	+1.3
2,356,953	-		IAI47_11165	0.68	-1.9
2,356,953	-		IAI47_11165	0.68	-2.3
2,356,953	-		IAI47_11165	0.68	-3.5
2,356,956	+		IAI47_11165	0.68	+0.1
2,357,010	+		IAI47_11165	0.70	-1.1
2,357,010	+		IAI47_11165	0.70	-2.1
2,357,021	+		IAI47_11165	0.71	+0.1
2,357,022	-		IAI47_11165	0.71	-1.3
2,357,022	-		IAI47_11165	0.71	-0.7
2,357,022	-		IAI47_11165	0.71	+0.0
2,357,022	-		IAI47_11165	0.71	-2.3
2,357,022	-		IAI47_11165	0.71	-0.9
2,357,082	-		IAI47_11165	0.73	-2.4
2,357,082	-		IAI47_11165	0.73	-2.0
2,357,102	+		IAI47_11165	0.74	+0.5
2,357,102	+		IAI47_11165	0.74	-0.9
2,357,103	-		IAI47_11165	0.74	-1.9
2,357,103	-		IAI47_11165	0.74	-0.5
2,357,350	+		IAI47_11165	0.83	-1.0
2,357,350	+		IAI47_11165	0.83	-3.8
2,357,351	-		IAI47_11165	0.83	+0.1
2,357,411	+		IAI47_11165	0.85	-3.4
2,357,411	+		IAI47_11165	0.85	-1.7
2,357,412	-		IAI47_11165	0.85	+0.1
2,357,412	-		IAI47_11165	0.85	-1.3
2,357,412	-		IAI47_11165	0.85	-0.9
2,357,412	-		IAI47_11165	0.85	-2.1
2,357,453	-		IAI47_11165	0.87	-1.5
2,357,453	-		IAI47_11165	0.87	-0.4
2,357,453	-		IAI47_11165	0.87	-0.7
2,357,468	+		IAI47_11165	0.88	-1.1
2,357,479	+		IAI47_11165	0.88	-1.5
2,357,479	+		IAI47_11165	0.88	-1.2
2,357,479	+		IAI47_11165	0.88	-1.3
2,357,479	+		IAI47_11165	0.88	-2.1
2,357,479	+		IAI47_11165	0.88	-2.1
2,357,479	+		IAI47_11165	0.88	-3.1
2,357,479	+		IAI47_11165	0.88	-3.3
2,357,480	-		IAI47_11165	0.88	-3.1
2,357,480	-		IAI47_11165	0.88	-4.0
2,357,480	-		IAI47_11165	0.88	-0.2
2,357,482	+		IAI47_11165	0.88	-2.6
2,357,482	+		IAI47_11165	0.88	-2.0
2,357,482	+		IAI47_11165	0.88	-3.2
2,357,482	+		IAI47_11165	0.88	+0.1
2,357,483	-		IAI47_11165	0.88	-1.3
2,357,483	-		IAI47_11165	0.88	-2.9
2,357,483	-		IAI47_11165	0.88	-0.1
2,357,483	-		IAI47_11165	0.88	-1.5
2,357,483	-		IAI47_11165	0.88	-1.3
2,357,512	+		IAI47_11165	0.89	-3.3
2,357,536	+				-0.8
2,357,536	+				-0.9
2,357,536	+				-3.7
2,357,537	-				+1.1
2,357,609	+				-2.9
2,357,773	+				-2.9
2,357,774	-				-1.7
2,357,916	-				-1.5
2,357,928	+				-3.3
2,357,929	-				-2.1
2,357,929	-				-0.8
2,357,929	-				-0.7
2,357,929	-				-1.1
2,357,929	-				+1.1
2,357,929	-				-3.9
2,357,929	-				-2.0
2,358,167	+				-2.5
2,358,204	+		IAI47_11170	0.10	-0.7
2,358,204	+		IAI47_11170	0.10	-3.1
2,358,205	-		IAI47_11170	0.10	-2.5
2,358,205	-		IAI47_11170	0.10	-3.7
2,358,207	+		IAI47_11170	0.10	-1.5
2,358,207	+		IAI47_11170	0.10	-1.9
2,358,207	+		IAI47_11170	0.10	-2.5
2,358,207	+		IAI47_11170	0.10	-2.4
2,358,247	+		IAI47_11170	0.11	-2.4
2,358,301	-		IAI47_11170	0.13	-2.0
2,358,356	-		IAI47_11170	0.14	-0.9
2,358,382	-		IAI47_11170	0.15	-0.2
2,358,421	+		IAI47_11170	0.16	-2.8
2,358,421	+		IAI47_11170	0.16	-1.3
2,358,421	+		IAI47_11170	0.16	-3.9
2,358,422	-		IAI47_11170	0.16	-0.4
2,358,422	-		IAI47_11170	0.16	-1.3
2,358,422	-		IAI47_11170	0.16	-2.9
2,358,443	-		IAI47_11170	0.16	-3.1
2,358,450	+		IAI47_11170	0.16	-1.3
2,358,451	-		IAI47_11170	0.16	-1.8
2,358,451	-		IAI47_11170	0.16	-0.1
2,358,451	-		IAI47_11170	0.16	-1.5
2,358,474	+		IAI47_11170	0.17	-0.5
2,358,474	+		IAI47_11170	0.17	-2.8
2,358,474	+		IAI47_11170	0.17	-3.7
2,358,474	+		IAI47_11170	0.17	-2.2
2,358,475	-		IAI47_11170	0.17	-3.2
2,358,475	-		IAI47_11170	0.17	-1.3
2,358,475	-		IAI47_11170	0.17	-0.5
2,358,555	+		IAI47_11170	0.19	-2.7
2,358,555	+		IAI47_11170	0.19	-4.2
2,358,555	+		IAI47_11170	0.19	-0.1
2,358,556	-		IAI47_11170	0.19	-2.3
2,358,556	-		IAI47_11170	0.19	-0.5
2,358,556	-		IAI47_11170	0.19	-2.3
2,358,556	-		IAI47_11170	0.19	-2.0
2,358,556	-		IAI47_11170	0.19	-3.3
2,358,675	+		IAI47_11170	0.22	-2.0
2,358,676	-		IAI47_11170	0.22	+1.5
2,358,823	+		IAI47_11170	0.25	-1.7
2,358,851	+		IAI47_11170	0.26	-3.5
2,358,851	+		IAI47_11170	0.26	-2.7
2,358,852	-		IAI47_11170	0.26	-0.1
2,358,888	+		IAI47_11170	0.27	-1.5
2,358,889	-		IAI47_11170	0.27	-1.7
2,358,898	-		IAI47_11170	0.27	+0.5
2,358,975	+		IAI47_11170	0.29	-3.1
2,358,975	+		IAI47_11170	0.29	-2.2
2,358,976	-		IAI47_11170	0.29	-1.3
2,359,053	+		IAI47_11170	0.31	-2.2
2,359,053	+		IAI47_11170	0.31	-1.3
2,359,053	+		IAI47_11170	0.31	-3.3
2,359,054	-		IAI47_11170	0.31	-1.1
2,359,054	-		IAI47_11170	0.31	-3.3
2,359,054	-		IAI47_11170	0.31	-2.3
2,359,179	+		IAI47_11170	0.34	-2.0
2,359,179	+		IAI47_11170	0.34	-2.3
2,359,179	+		IAI47_11170	0.34	-2.4
2,359,180	-		IAI47_11170	0.34	-2.5
2,359,180	-		IAI47_11170	0.34	-3.2
2,359,180	-		IAI47_11170	0.34	-3.1
2,359,366	+		IAI47_11170	0.39	-2.0
2,359,366	+		IAI47_11170	0.39	-0.5
2,359,367	-		IAI47_11170	0.39	+0.2
2,359,367	-		IAI47_11170	0.39	-3.2
2,359,494	-		IAI47_11170	0.42	-4.4
2,359,501	+		IAI47_11170	0.42	+0.0
2,359,501	+		IAI47_11170	0.42	-1.3
2,359,502	-		IAI47_11170	0.42	-3.3
2,359,527	+		IAI47_11170	0.43	-0.6
2,359,527	+		IAI47_11170	0.43	-1.9
2,359,534	+		IAI47_11170	0.43	-0.8
2,359,534	+		IAI47_11170	0.43	-3.5
2,359,535	-		IAI47_11170	0.43	-3.7
2,359,535	-		IAI47_11170	0.43	-3.1
2,359,599	+		IAI47_11170	0.45	-4.3
2,359,600	-		IAI47_11170	0.45	-2.2
2,359,600	-		IAI47_11170	0.45	-1.5
2,359,600	-		IAI47_11170	0.45	-0.5
2,359,629	+		IAI47_11170	0.45	-0.7
2,359,629	+		IAI47_11170	0.45	-1.2
2,359,629	+		IAI47_11170	0.45	-2.0
2,359,630	-		IAI47_11170	0.45	-3.0
2,359,630	-		IAI47_11170	0.45	-0.7
2,359,630	-		IAI47_11170	0.45	-2.1
2,359,691	+		IAI47_11170	0.47	-0.9
2,359,692	-		IAI47_11170	0.47	-3.1
2,359,692	-		IAI47_11170	0.47	-2.2
2,359,702	+		IAI47_11170	0.47	-2.8
2,359,702	+		IAI47_11170	0.47	-0.8
2,359,702	+		IAI47_11170	0.47	-1.7
2,359,702	+		IAI47_11170	0.47	-1.1
2,359,703	-		IAI47_11170	0.47	-2.1
2,359,703	-		IAI47_11170	0.47	-2.3
2,359,870	+		IAI47_11170	0.51	-3.8
2,359,870	+		IAI47_11170	0.51	-2.1
2,360,231	-		IAI47_11170	0.60	-3.7
2,360,444	-		IAI47_11170	0.65	+0.1
2,360,508	+		IAI47_11170	0.67	-1.3
2,360,508	+		IAI47_11170	0.67	-1.9
2,360,508	+		IAI47_11170	0.67	-2.3
2,360,533	-		IAI47_11170	0.68	-3.5
2,360,556	+		IAI47_11170	0.68	-2.9
2,360,556	+		IAI47_11170	0.68	+1.5
2,360,571	+		IAI47_11170	0.68	-0.5
2,360,572	-		IAI47_11170	0.68	-0.9
2,360,645	+		IAI47_11170	0.70	+1.5
2,360,656	+		IAI47_11170	0.71	-1.7
2,360,657	-		IAI47_11170	0.71	-1.7
2,360,866	+		IAI47_11170	0.76	-4.7
2,360,867	-		IAI47_11170	0.76	-1.6
2,361,063	+		IAI47_11170	0.81	-2.2
2,361,586	+				-1.5
2,361,651	+				-2.2
2,361,729	+				-2.0
2,361,730	-				-3.2
2,361,730	-				-2.3
2,361,730	-				-1.7
2,361,826	+				-2.7
2,361,826	+				-2.8
2,361,826	+				-4.1
2,361,826	+				-4.1
2,361,826	+				-1.5
2,361,826	+				-0.1
2,361,826	+				-2.0
2,361,827	-				+0.3
2,361,827	-				-2.1
2,361,827	-				-1.7
2,361,827	-				-2.2
2,361,827	-				-2.6
2,361,827	-				-0.9
2,361,830	+				-2.9
2,361,830	+				-2.7
2,361,830	+				-2.3
2,361,831	-				-3.5
2,361,831	-				-3.5
2,361,831	-				-4.2
2,361,865	+				-0.9
2,361,865	+				-2.3
2,361,865	+				-2.7
2,361,865	+				-1.9
2,361,866	-				-2.6
2,361,889	+				-0.6
2,361,890	-				-2.5
2,362,026	+		IAI47_11175	0.20	-1.7
2,362,071	+		IAI47_11175	0.26	+1.9
2,362,071	+		IAI47_11175	0.26	-1.7
2,362,072	-		IAI47_11175	0.26	-0.1
2,362,072	-		IAI47_11175	0.26	-2.3
2,362,080	-		IAI47_11175	0.27	+0.5
2,362,085	+		IAI47_11175	0.28	-2.7
2,362,085	+		IAI47_11175	0.28	-3.3
2,362,086	-		IAI47_11175	0.28	+0.5
2,362,086	-		IAI47_11175	0.28	-2.7
2,362,086	-		IAI47_11175	0.28	+0.1
2,362,086	-		IAI47_11175	0.28	-0.1
2,362,086	-		IAI47_11175	0.28	-0.1
2,362,103	+		IAI47_11175	0.30	-4.0
2,362,334	+		IAI47_11175	0.59	-1.5
2,362,335	-		IAI47_11175	0.59	-1.0
2,362,335	-		IAI47_11175	0.59	-0.8
2,362,448	+		IAI47_11175	0.74	-2.0
2,362,461	+		IAI47_11175	0.75	-1.5
2,362,461	+		IAI47_11175	0.75	-3.4
2,362,483	-		IAI47_11175	0.78	-0.3
2,362,535	+		IAI47_11175	0.85	-1.2
2,362,535	+		IAI47_11175	0.85	-2.9
2,362,536	-		IAI47_11175	0.85	-2.6
2,362,536	-		IAI47_11175	0.85	-1.3
2,362,640	+				-1.1
2,362,640	+				-1.3
2,362,641	-				-1.9
2,362,641	-				-2.3
2,362,641	-				-2.0
2,362,641	-				-1.7