Strain Fitness in Pantoea sp. MT58 around IAI47_11165

Experiment: nitrogen source nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 20mM
2,354,494	-		IAI47_11160	0.19	-0.5
2,354,610	+		IAI47_11160	0.33	-1.7
2,354,610	+		IAI47_11160	0.33	+0.2
2,354,610	+		IAI47_11160	0.33	-2.0
2,354,610	+		IAI47_11160	0.33	-1.6
2,354,612	+		IAI47_11160	0.33	-1.9
2,354,612	+		IAI47_11160	0.33	-2.1
2,354,612	+		IAI47_11160	0.33	-2.3
2,354,612	+		IAI47_11160	0.33	-1.9
2,354,613	-		IAI47_11160	0.33	-1.9
2,354,884	-		IAI47_11160	0.65	-3.2
2,354,908	-		IAI47_11160	0.68	-2.2
2,354,910	+		IAI47_11160	0.68	-2.4
2,354,965	+		IAI47_11160	0.75	-1.7
2,354,965	+		IAI47_11160	0.75	-0.5
2,354,966	-		IAI47_11160	0.75	-0.9
2,355,017	+		IAI47_11160	0.81	-2.9
2,355,017	+		IAI47_11160	0.81	-2.4
2,355,017	+		IAI47_11160	0.81	-1.3
2,355,018	-		IAI47_11160	0.81	-1.9
2,355,018	-		IAI47_11160	0.81	-2.2
2,355,018	-		IAI47_11160	0.81	-2.1
2,355,018	-		IAI47_11160	0.81	+1.5
2,355,018	-		IAI47_11160	0.81	-1.7
2,355,018	-		IAI47_11160	0.81	-3.3
2,355,044	-		IAI47_11160	0.84	-0.4
2,355,103	+				-3.0
2,355,103	+				-2.1
2,355,103	+				-1.1
2,355,104	-				-2.9
2,355,104	-				-1.5
2,355,104	-				-2.2
2,355,104	-				-2.9
2,355,104	-				-0.8
2,355,143	-				+0.1
2,355,147	+				+1.5
2,355,148	-				-3.1
2,355,148	-				-1.5
2,355,148	-				+0.1
2,355,204	+				-1.3
2,355,204	+				-2.4
2,355,204	+				-1.1
2,355,204	+				-3.6
2,355,205	-				-1.2
2,355,205	-				-1.7
2,355,205	-				-0.0
2,355,205	-				-2.0
2,355,205	-				+0.3
2,355,205	-				+0.1
2,355,224	+				-2.7
2,355,225	-				-1.5
2,355,252	+				-2.6
2,355,252	+				-0.1
2,355,253	-				+0.0
2,355,275	+				-3.2
2,355,275	+				-0.7
2,355,276	-				-1.9
2,355,276	-				-2.0
2,355,329	+				-1.7
2,355,330	-				-1.7
2,355,335	+				-0.8
2,355,336	-				-2.4
2,355,336	-				-2.9
2,355,336	-				-3.1
2,355,336	-				-1.1
2,355,341	+				-1.3
2,355,341	+				-3.1
2,355,342	-				-0.3
2,355,656	-		IAI47_11165	0.18	-0.1
2,355,660	+		IAI47_11165	0.19	-0.8
2,355,660	+		IAI47_11165	0.19	-3.7
2,355,660	+		IAI47_11165	0.19	-2.9
2,355,660	+		IAI47_11165	0.19	-1.0
2,355,661	-		IAI47_11165	0.19	-3.9
2,355,661	-		IAI47_11165	0.19	-2.7
2,355,661	-		IAI47_11165	0.19	-0.9
2,355,794	+		IAI47_11165	0.24	+0.1
2,355,795	-		IAI47_11165	0.24	-2.0
2,355,795	-		IAI47_11165	0.24	-0.8
2,355,875	+		IAI47_11165	0.27	-3.2
2,355,875	+		IAI47_11165	0.27	-3.7
2,355,875	+		IAI47_11165	0.27	-1.9
2,355,943	+		IAI47_11165	0.29	-4.5
2,356,031	+		IAI47_11165	0.33	-1.5
2,356,031	+		IAI47_11165	0.33	-1.7
2,356,031	+		IAI47_11165	0.33	-1.8
2,356,031	+		IAI47_11165	0.33	-1.7
2,356,032	-		IAI47_11165	0.33	-0.3
2,356,032	-		IAI47_11165	0.33	+1.0
2,356,032	-		IAI47_11165	0.33	-1.6
2,356,058	+		IAI47_11165	0.34	-2.0
2,356,190	+		IAI47_11165	0.39	-1.4
2,356,262	+		IAI47_11165	0.42	-1.5
2,356,263	-		IAI47_11165	0.42	-2.6
2,356,445	+		IAI47_11165	0.49	-1.7
2,356,446	-		IAI47_11165	0.49	+0.8
2,356,526	+		IAI47_11165	0.52	-0.1
2,356,526	+		IAI47_11165	0.52	-1.3
2,356,631	+		IAI47_11165	0.56	-1.1
2,356,758	-		IAI47_11165	0.60	-1.6
2,356,781	+		IAI47_11165	0.61	-3.7
2,356,864	-		IAI47_11165	0.65	-0.1
2,356,868	+		IAI47_11165	0.65	-0.3
2,356,889	+		IAI47_11165	0.65	-3.2
2,356,889	+		IAI47_11165	0.65	-2.8
2,356,890	-		IAI47_11165	0.66	+1.5
2,356,890	-		IAI47_11165	0.66	+0.2
2,356,890	-		IAI47_11165	0.66	-1.0
2,356,890	-		IAI47_11165	0.66	-1.1
2,356,905	-		IAI47_11165	0.66	-0.7
2,356,905	-		IAI47_11165	0.66	-0.1
2,356,931	+		IAI47_11165	0.67	-3.8
2,356,932	-		IAI47_11165	0.67	-2.3
2,356,940	+		IAI47_11165	0.67	-2.4
2,356,940	+		IAI47_11165	0.67	+0.1
2,356,941	-		IAI47_11165	0.67	-0.1
2,356,952	+		IAI47_11165	0.68	-2.3
2,356,952	+		IAI47_11165	0.68	-2.3
2,356,952	+		IAI47_11165	0.68	-5.0
2,356,952	+		IAI47_11165	0.68	-2.9
2,356,953	-		IAI47_11165	0.68	+0.9
2,356,953	-		IAI47_11165	0.68	-1.1
2,356,953	-		IAI47_11165	0.68	-1.3
2,356,953	-		IAI47_11165	0.68	+1.3
2,356,953	-		IAI47_11165	0.68	-1.9
2,356,953	-		IAI47_11165	0.68	-2.3
2,356,953	-		IAI47_11165	0.68	-3.5
2,356,956	+		IAI47_11165	0.68	+0.1
2,357,010	+		IAI47_11165	0.70	-1.1
2,357,010	+		IAI47_11165	0.70	-2.1
2,357,021	+		IAI47_11165	0.71	+0.1
2,357,022	-		IAI47_11165	0.71	-1.3
2,357,022	-		IAI47_11165	0.71	-0.7
2,357,022	-		IAI47_11165	0.71	+0.0
2,357,022	-		IAI47_11165	0.71	-2.3
2,357,022	-		IAI47_11165	0.71	-0.9
2,357,082	-		IAI47_11165	0.73	-2.4
2,357,082	-		IAI47_11165	0.73	-2.0
2,357,102	+		IAI47_11165	0.74	+0.5
2,357,102	+		IAI47_11165	0.74	-0.9
2,357,103	-		IAI47_11165	0.74	-1.9
2,357,103	-		IAI47_11165	0.74	-0.5
2,357,350	+		IAI47_11165	0.83	-1.0
2,357,350	+		IAI47_11165	0.83	-3.8
2,357,351	-		IAI47_11165	0.83	+0.1
2,357,411	+		IAI47_11165	0.85	-3.4
2,357,411	+		IAI47_11165	0.85	-1.7
2,357,412	-		IAI47_11165	0.85	+0.1
2,357,412	-		IAI47_11165	0.85	-1.3
2,357,412	-		IAI47_11165	0.85	-0.9
2,357,412	-		IAI47_11165	0.85	-2.1
2,357,453	-		IAI47_11165	0.87	-1.5
2,357,453	-		IAI47_11165	0.87	-0.4
2,357,453	-		IAI47_11165	0.87	-0.7
2,357,468	+		IAI47_11165	0.88	-1.1
2,357,479	+		IAI47_11165	0.88	-1.5
2,357,479	+		IAI47_11165	0.88	-1.2
2,357,479	+		IAI47_11165	0.88	-1.3
2,357,479	+		IAI47_11165	0.88	-2.1
2,357,479	+		IAI47_11165	0.88	-2.1
2,357,479	+		IAI47_11165	0.88	-3.1
2,357,479	+		IAI47_11165	0.88	-3.3
2,357,480	-		IAI47_11165	0.88	-3.1
2,357,480	-		IAI47_11165	0.88	-4.0
2,357,480	-		IAI47_11165	0.88	-0.2
2,357,482	+		IAI47_11165	0.88	-2.6
2,357,482	+		IAI47_11165	0.88	-2.0
2,357,482	+		IAI47_11165	0.88	-3.2
2,357,482	+		IAI47_11165	0.88	+0.1
2,357,483	-		IAI47_11165	0.88	-1.3
2,357,483	-		IAI47_11165	0.88	-2.9
2,357,483	-		IAI47_11165	0.88	-0.1
2,357,483	-		IAI47_11165	0.88	-1.5
2,357,483	-		IAI47_11165	0.88	-1.3
2,357,512	+		IAI47_11165	0.89	-3.3
2,357,536	+				-0.8
2,357,536	+				-0.9
2,357,536	+				-3.7
2,357,537	-				+1.1
2,357,609	+				-2.9
2,357,773	+				-2.9
2,357,774	-				-1.7
2,357,916	-				-1.5
2,357,928	+				-3.3
2,357,929	-				-2.1
2,357,929	-				-0.8
2,357,929	-				-0.7
2,357,929	-				-1.1
2,357,929	-				+1.1
2,357,929	-				-3.9
2,357,929	-				-2.0
2,358,167	+				-2.5
2,358,204	+		IAI47_11170	0.10	-0.7
2,358,204	+		IAI47_11170	0.10	-3.1
2,358,205	-		IAI47_11170	0.10	-2.5
2,358,205	-		IAI47_11170	0.10	-3.7
2,358,207	+		IAI47_11170	0.10	-1.5
2,358,207	+		IAI47_11170	0.10	-1.9
2,358,207	+		IAI47_11170	0.10	-2.5
2,358,207	+		IAI47_11170	0.10	-2.4
2,358,247	+		IAI47_11170	0.11	-2.4
2,358,301	-		IAI47_11170	0.13	-2.0
2,358,356	-		IAI47_11170	0.14	-0.9
2,358,382	-		IAI47_11170	0.15	-0.2
2,358,421	+		IAI47_11170	0.16	-2.8
2,358,421	+		IAI47_11170	0.16	-1.3
2,358,421	+		IAI47_11170	0.16	-3.9
2,358,422	-		IAI47_11170	0.16	-0.4
2,358,422	-		IAI47_11170	0.16	-1.3
2,358,422	-		IAI47_11170	0.16	-2.9
2,358,443	-		IAI47_11170	0.16	-3.1
2,358,450	+		IAI47_11170	0.16	-1.3
2,358,451	-		IAI47_11170	0.16	-1.8
2,358,451	-		IAI47_11170	0.16	-0.1
2,358,451	-		IAI47_11170	0.16	-1.5
2,358,474	+		IAI47_11170	0.17	-0.5
2,358,474	+		IAI47_11170	0.17	-2.8
2,358,474	+		IAI47_11170	0.17	-3.7
2,358,474	+		IAI47_11170	0.17	-2.2
2,358,475	-		IAI47_11170	0.17	-3.2
2,358,475	-		IAI47_11170	0.17	-1.3
2,358,475	-		IAI47_11170	0.17	-0.5
2,358,555	+		IAI47_11170	0.19	-2.7
2,358,555	+		IAI47_11170	0.19	-4.2
2,358,555	+		IAI47_11170	0.19	-0.1
2,358,556	-		IAI47_11170	0.19	-2.3
2,358,556	-		IAI47_11170	0.19	-0.5
2,358,556	-		IAI47_11170	0.19	-2.3
2,358,556	-		IAI47_11170	0.19	-2.0
2,358,556	-		IAI47_11170	0.19	-3.3
2,358,675	+		IAI47_11170	0.22	-2.0
2,358,676	-		IAI47_11170	0.22	+1.5