Strain Fitness in Pantoea sp. MT58 around IAI47_06625

Experiment: nitrogen source nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 20mM
1,379,618	+		IAI47_06620	0.50	+0.3
1,379,618	+		IAI47_06620	0.50	-2.8
1,379,619	-		IAI47_06620	0.50	-0.8
1,379,619	-		IAI47_06620	0.50	+0.7
1,379,663	+		IAI47_06620	0.53	+2.1
1,379,663	+		IAI47_06620	0.53	+0.1
1,379,664	-		IAI47_06620	0.53	+0.3
1,379,664	-		IAI47_06620	0.53	-0.2
1,379,671	+		IAI47_06620	0.53	-0.4
1,379,672	-		IAI47_06620	0.53	-1.3
1,379,672	-		IAI47_06620	0.53	-0.6
1,379,672	-		IAI47_06620	0.53	-0.1
1,379,680	-		IAI47_06620	0.54	-1.1
1,379,706	+		IAI47_06620	0.56	-0.6
1,379,706	+		IAI47_06620	0.56	+1.2
1,379,727	+		IAI47_06620	0.57	+0.9
1,379,771	-		IAI47_06620	0.60	+1.3
1,379,868	+		IAI47_06620	0.66	+0.9
1,379,869	-		IAI47_06620	0.66	+0.1
1,379,869	-		IAI47_06620	0.66	-0.9
1,379,884	+		IAI47_06620	0.67	+3.3
1,379,885	-		IAI47_06620	0.67	+0.3
1,379,885	-		IAI47_06620	0.67	-0.0
1,379,885	-		IAI47_06620	0.67	-0.9
1,380,031	+		IAI47_06620	0.76	-0.1
1,380,031	+		IAI47_06620	0.76	-0.2
1,380,031	+		IAI47_06620	0.76	-0.1
1,380,032	-		IAI47_06620	0.76	+0.8
1,380,032	-		IAI47_06620	0.76	+2.3
1,380,032	-		IAI47_06620	0.76	-0.9
1,380,032	-		IAI47_06620	0.76	+0.3
1,380,076	+		IAI47_06620	0.79	+0.2
1,380,077	-		IAI47_06620	0.79	+0.4
1,380,077	-		IAI47_06620	0.79	+0.2
1,380,146	+		IAI47_06620	0.84	-2.1
1,380,146	+		IAI47_06620	0.84	-1.3
1,380,146	+		IAI47_06620	0.84	+0.9
1,380,146	+		IAI47_06620	0.84	-0.6
1,380,146	+		IAI47_06620	0.84	-1.7
1,380,146	+		IAI47_06620	0.84	+0.6
1,380,146	+		IAI47_06620	0.84	-0.2
1,380,146	+		IAI47_06620	0.84	-0.1
1,380,146	+		IAI47_06620	0.84	-2.3
1,380,146	+		IAI47_06620	0.84	-0.3
1,380,146	+		IAI47_06620	0.84	+1.1
1,380,146	+		IAI47_06620	0.84	-0.4
1,380,146	+		IAI47_06620	0.84	+0.4
1,380,146	+		IAI47_06620	0.84	-0.4
1,380,146	+		IAI47_06620	0.84	+0.1
1,380,146	+		IAI47_06620	0.84	-0.9
1,380,146	+		IAI47_06620	0.84	-2.5
1,380,146	+		IAI47_06620	0.84	+1.9
1,380,147	-		IAI47_06620	0.84	-3.7
1,380,147	-		IAI47_06620	0.84	+1.4
1,380,147	-		IAI47_06620	0.84	-0.7
1,380,147	-		IAI47_06620	0.84	+0.3
1,380,147	-		IAI47_06620	0.84	+1.4
1,380,147	-		IAI47_06620	0.84	+2.0
1,380,147	-		IAI47_06620	0.84	+0.5
1,380,147	-		IAI47_06620	0.84	+0.6
1,380,147	-		IAI47_06620	0.84	+0.3
1,380,147	-		IAI47_06620	0.84	+0.4
1,380,147	-		IAI47_06620	0.84	-2.4
1,380,147	-		IAI47_06620	0.84	-1.4
1,380,147	-		IAI47_06620	0.84	-0.7
1,380,147	-		IAI47_06620	0.84	-0.4
1,380,147	-		IAI47_06620	0.84	-0.3
1,380,147	-		IAI47_06620	0.84	-0.2
1,380,152	-		IAI47_06620	0.84	-0.2
1,380,152	-		IAI47_06620	0.84	+0.1
1,380,169	+		IAI47_06620	0.85	+0.4
1,380,200	-		IAI47_06620	0.87	-0.5
1,380,320	+				-1.0
1,380,320	+				+0.3
1,380,321	-				-2.1
1,380,340	+				-1.5
1,380,364	+				+0.7
1,380,364	+				+0.5
1,380,364	+				-1.8
1,380,364	+				-1.4
1,380,365	-				+0.6
1,380,365	-				+0.5
1,380,380	+				-0.2
1,380,419	+				-0.8
1,380,420	-				+2.7
1,380,422	+				-0.1
1,380,422	+				+1.3
1,380,425	+				-1.7
1,380,425	+				+0.5
1,380,425	+				+0.7
1,380,426	-				-1.5
1,380,426	-				+1.0
1,380,426	-				-1.5
1,380,426	-				+0.5
1,380,430	+				+0.5
1,380,430	+				-2.5
1,380,430	+				+0.8
1,380,431	-				+0.1
1,380,467	+				-1.1
1,380,467	+				-0.3
1,380,467	+				+0.6
1,380,467	+				+0.4
1,380,469	+				+1.4
1,380,495	+				-1.1
1,380,508	+				+0.8
1,380,520	-				-1.1
1,380,584	+				+1.7
1,380,585	-				+3.5
1,380,585	-				-1.1
1,380,585	-				+0.3
1,380,585	-				-1.7
1,380,615	-				-0.1
1,380,635	+				-1.0
1,380,635	+				+0.5
1,380,635	+				-2.8
1,380,636	-				-1.0
1,380,636	-				-0.9
1,380,636	-				-0.6
1,380,636	-				-0.5
1,380,636	-				-1.3
1,380,711	+		IAI47_06625	0.16	+1.8
1,380,712	+		IAI47_06625	0.16	+0.5
1,380,712	+		IAI47_06625	0.16	+0.3
1,380,712	+		IAI47_06625	0.16	+0.9
1,380,712	+		IAI47_06625	0.16	+0.4
1,380,713	-		IAI47_06625	0.17	+2.3
1,380,713	-		IAI47_06625	0.17	-0.3
1,380,713	-		IAI47_06625	0.17	+4.0
1,380,730	+		IAI47_06625	0.20	-0.5
1,380,731	-		IAI47_06625	0.20	+0.2
1,380,731	-		IAI47_06625	0.20	+1.3
1,380,744	+		IAI47_06625	0.22	+0.5
1,380,744	+		IAI47_06625	0.22	+1.5
1,380,744	+		IAI47_06625	0.22	-1.4
1,380,744	+		IAI47_06625	0.22	-0.5
1,380,744	+		IAI47_06625	0.22	+0.5
1,380,744	+		IAI47_06625	0.22	+0.6
1,380,744	+		IAI47_06625	0.22	+2.2
1,380,745	-		IAI47_06625	0.22	+1.4
1,380,804	-		IAI47_06625	0.32	+1.2
1,380,809	-		IAI47_06625	0.33	+0.5
1,380,850	+		IAI47_06625	0.40	+1.5
1,380,851	-		IAI47_06625	0.41	+0.1
1,380,851	-		IAI47_06625	0.41	+1.3
1,380,851	-		IAI47_06625	0.41	+0.1
1,380,861	-		IAI47_06625	0.42	+0.3
1,380,861	-		IAI47_06625	0.42	+1.2
1,380,861	-		IAI47_06625	0.42	+1.9
1,380,896	+		IAI47_06625	0.48	+1.6
1,380,896	+		IAI47_06625	0.48	+1.7
1,380,897	-		IAI47_06625	0.49	+1.5
1,380,897	-		IAI47_06625	0.49	+1.0
1,380,897	-		IAI47_06625	0.49	+2.0
1,380,897	-		IAI47_06625	0.49	+2.3
1,380,946	-		IAI47_06625	0.57	+1.2
1,380,969	+		IAI47_06625	0.61	+3.0
1,380,970	-		IAI47_06625	0.61	+1.1
1,380,991	+		IAI47_06625	0.65	+1.2
1,380,991	+		IAI47_06625	0.65	+0.6
1,380,991	+		IAI47_06625	0.65	+1.7
1,380,992	-		IAI47_06625	0.65	+2.1
1,380,992	-		IAI47_06625	0.65	+0.7
1,380,992	-		IAI47_06625	0.65	+2.6
1,380,992	-		IAI47_06625	0.65	-0.4
1,380,992	-		IAI47_06625	0.65	+1.0
1,380,992	-		IAI47_06625	0.65	+1.2
1,380,992	-		IAI47_06625	0.65	+2.1
1,380,992	-		IAI47_06625	0.65	+0.9
1,381,004	-		IAI47_06625	0.67	+1.1
1,381,044	-		IAI47_06625	0.74	+1.0
1,381,063	+		IAI47_06625	0.77	+1.2
1,381,082	-		IAI47_06625	0.81	+1.7
1,381,099	+		IAI47_06625	0.84	-0.5
1,381,099	+		IAI47_06625	0.84	+1.6
1,381,100	-		IAI47_06625	0.84	+1.2
1,381,105	+		IAI47_06625	0.85	+2.4
1,381,106	-		IAI47_06625	0.85	+1.7
1,381,106	-		IAI47_06625	0.85	+3.0
1,381,106	-		IAI47_06625	0.85	+1.5
1,381,111	+		IAI47_06625	0.86	+2.0
1,381,111	+		IAI47_06625	0.86	+1.6
1,381,111	+		IAI47_06625	0.86	+3.0
1,381,111	+		IAI47_06625	0.86	-0.3
1,381,112	-		IAI47_06625	0.86	+0.3
1,381,112	-		IAI47_06625	0.86	+0.1
1,381,112	-		IAI47_06625	0.86	+1.3
1,381,112	-		IAI47_06625	0.86	+2.0
1,381,112	-		IAI47_06625	0.86	+1.9
1,381,112	-		IAI47_06625	0.86	+2.9
1,381,112	-		IAI47_06625	0.86	+2.8
1,381,112	-		IAI47_06625	0.86	+1.9
1,381,112	-		IAI47_06625	0.86	+1.3
1,381,160	+				+1.4
1,381,161	-				+1.5
1,381,161	-				+0.8
1,381,161	-				+1.4
1,381,161	-				+1.4
1,381,161	-				+1.2
1,381,161	-				+0.9
1,381,161	-				+0.9
1,381,161	-				+1.4
1,381,162	+				+1.9
1,381,162	+				+1.6
1,381,162	+				+0.3
1,381,162	+				+2.0
1,381,162	+				+1.6
1,381,162	+				+1.7
1,381,162	+				+0.7
1,381,162	+				+1.4
1,381,162	+				+2.2
1,381,162	+				+1.8
1,381,162	+				-0.3
1,381,162	+				+1.6
1,381,162	+				+1.8
1,381,162	+				+1.0
1,381,162	+				+1.2
1,381,162	+				+1.5
1,381,162	+				-0.6
1,381,163	-				+2.5
1,381,163	-				+0.9
1,381,163	-				+2.4
1,381,163	-				+1.1
1,381,163	-				+0.5
1,381,163	-				+1.7
1,381,163	-				+1.4
1,381,163	-				+2.5
1,381,163	-				+2.1
1,381,163	-				+1.6
1,381,163	-				+0.1
1,381,163	-				+0.6
1,381,163	-				+3.0
1,381,163	-				+1.0
1,381,163	-				-0.2
1,381,163	-				+2.0
1,381,163	-				+1.2
1,381,163	-				+1.8
1,381,163	-				+1.2
1,381,163	-				+0.1
1,381,163	-				+2.7
1,381,163	-				+1.7
1,381,163	-				+0.9
1,381,163	-				+1.4
1,381,163	-				+1.5
1,381,163	-				+1.1
1,381,164	+				+2.5
1,381,164	+				+0.5
1,381,164	+				-2.7
1,381,164	+				+1.5
1,381,164	+				+1.7
1,381,165	-				+0.6
1,381,165	-				+1.3
1,381,165	-				+1.0
1,381,165	-				+1.0
1,381,165	-				+2.2
1,381,165	-				+1.1
1,381,165	-				+1.4
1,381,165	-				+0.7
1,381,165	-				+0.8
1,381,172	+				+0.4
1,381,193	+				-2.4
1,381,193	+				+0.7
1,381,194	-				-0.9
1,381,260	+				+4.3
1,381,260	+				+1.6
1,381,261	-				+0.6
1,381,261	-				+0.3
1,381,261	-				+0.3
1,381,264	-				+0.8
1,381,277	+				+0.5
1,381,290	+				+1.2
1,381,291	-				-0.7
1,381,294	+				+0.9
1,381,295	-				-1.1
1,381,295	-				-0.2
1,381,295	-				-0.3
1,381,295	-				-1.3
1,381,297	+				+0.7
1,381,298	-				-0.0
1,381,353	+				-0.5
1,381,353	+				+0.4
1,381,353	+				-0.0
1,381,354	-				+0.3
1,381,375	-				-0.3
1,381,375	-				-1.0
1,381,375	-				+2.3
1,381,382	+				+0.3
1,381,383	-				+0.7
1,381,383	-				-1.1
1,381,383	-				+0.1
1,381,406	+				+0.8
1,381,407	-				+0.5
1,381,418	+				+1.5
1,381,418	+				+0.1
1,381,420	+				-0.3
1,381,421	-				+0.7
1,381,459	+				-2.1
1,381,460	-				+0.1
1,381,464	+				-0.5
1,381,465	-				+0.8
1,381,484	+				+0.6
1,381,484	+				+1.7
1,381,485	-				-0.5
1,381,527	+				-0.6
1,381,528	-				+0.5
1,381,528	-				-1.3
1,381,528	-				+1.7
1,381,551	+				-0.2
1,381,551	+				+0.8
1,381,551	+				+0.6
1,381,552	-				-2.4
1,381,552	-				-0.5
1,381,586	+				-2.1
1,381,598	+				+0.4
1,381,598	+				+0.8
1,381,625	-				-1.5
1,381,633	-				-1.2
1,381,656	-				-0.2
1,381,669	+				+1.4
1,381,677	+				+1.1
1,381,678	-				-0.3
1,381,700	-				+0.6
1,381,706	+				+0.4
1,381,707	-				+1.2
1,381,707	-				-3.0
1,381,719	+				+0.7
1,381,719	+				-1.5
1,381,720	-				-0.0
1,381,720	-				+0.0
1,381,721	+				-0.1
1,381,721	+				+2.5
1,381,721	+				+0.9
1,381,721	+				+0.7
1,381,721	+				+0.4
1,381,722	-				+0.7
1,381,722	-				+0.7
1,381,722	-				-1.1
1,381,722	-				+0.8
1,381,725	+				+0.7
1,381,733	-				-0.0
1,381,752	+				-2.3
1,381,752	+				+1.2
1,381,759	+				+0.3
1,381,760	-				+0.2
1,381,760	-				-0.4
1,381,777	+		IAI47_06630	0.10	-0.2
1,381,777	+		IAI47_06630	0.10	+0.2
1,381,778	-		IAI47_06630	0.10	-2.7
1,381,778	-		IAI47_06630	0.10	-0.5
1,381,778	-		IAI47_06630	0.10	-2.0
1,381,778	-		IAI47_06630	0.10	+0.7
1,381,830	+		IAI47_06630	0.18	+0.5
1,381,831	-		IAI47_06630	0.18	+1.2
1,381,836	+		IAI47_06630	0.19	-0.6
1,381,876	+		IAI47_06630	0.24	+1.5
1,381,876	+		IAI47_06630	0.24	-1.9
1,381,876	+		IAI47_06630	0.24	+0.2
1,381,877	-		IAI47_06630	0.24	-1.1
1,381,887	+		IAI47_06630	0.26	-0.1
1,381,887	+		IAI47_06630	0.26	+0.0
1,381,902	+		IAI47_06630	0.28	+0.5
1,381,903	-		IAI47_06630	0.28	-2.4
1,381,922	+		IAI47_06630	0.31	-0.7
1,381,923	-		IAI47_06630	0.31	-0.0
1,381,932	+		IAI47_06630	0.32	+1.0
1,381,932	+		IAI47_06630	0.32	+0.1
1,381,932	+		IAI47_06630	0.32	-2.0
1,381,933	-		IAI47_06630	0.32	+0.1
1,381,933	-		IAI47_06630	0.32	-0.3
1,381,959	+		IAI47_06630	0.36	+0.7
1,381,999	-		IAI47_06630	0.42	-0.9
1,382,014	+		IAI47_06630	0.44	+1.3
1,382,015	-		IAI47_06630	0.44	-0.2
1,382,077	+		IAI47_06630	0.53	+0.0
1,382,077	+		IAI47_06630	0.53	-0.7
1,382,077	+		IAI47_06630	0.53	+0.6
1,382,077	+		IAI47_06630	0.53	+0.2
1,382,077	+		IAI47_06630	0.53	-1.7
1,382,077	+		IAI47_06630	0.53	+0.8
1,382,078	-		IAI47_06630	0.53	-0.2
1,382,094	+		IAI47_06630	0.55	-0.6
1,382,094	+		IAI47_06630	0.55	-0.1
1,382,094	+		IAI47_06630	0.55	+1.6
1,382,095	-		IAI47_06630	0.55	+0.3
1,382,095	-		IAI47_06630	0.55	-0.6
1,382,124	+		IAI47_06630	0.59	-0.1
1,382,124	+		IAI47_06630	0.59	-1.0
1,382,125	-		IAI47_06630	0.59	+0.2
1,382,183	+		IAI47_06630	0.68	+1.7
1,382,183	+		IAI47_06630	0.68	-2.0
1,382,183	+		IAI47_06630	0.68	-1.7
1,382,184	-		IAI47_06630	0.68	+1.2
1,382,184	-		IAI47_06630	0.68	+0.4
1,382,184	-		IAI47_06630	0.68	-0.4
1,382,184	-		IAI47_06630	0.68	-0.3