Strain Fitness in Pantoea sp. MT58 around IAI47_05315

Experiment: nitrogen source nitrate 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 20mM
1,123,845	+		IAI47_05310	0.73	+0.2
1,123,845	+		IAI47_05310	0.73	+1.2
1,123,846	-		IAI47_05310	0.73	+0.5
1,123,846	-		IAI47_05310	0.73	-0.0
1,123,846	-		IAI47_05310	0.73	+1.1
1,123,846	-		IAI47_05310	0.73	-0.3
1,123,851	+		IAI47_05310	0.74	+0.2
1,123,851	+		IAI47_05310	0.74	+0.9
1,123,851	+		IAI47_05310	0.74	+0.3
1,123,851	+		IAI47_05310	0.74	+0.3
1,123,851	+		IAI47_05310	0.74	-0.1
1,123,851	+		IAI47_05310	0.74	-0.1
1,123,851	+		IAI47_05310	0.74	-0.3
1,123,851	+		IAI47_05310	0.74	+2.3
1,123,851	+		IAI47_05310	0.74	+2.0
1,123,851	+		IAI47_05310	0.74	-0.2
1,123,851	+		IAI47_05310	0.74	+0.6
1,123,851	+		IAI47_05310	0.74	+0.6
1,123,852	-		IAI47_05310	0.74	+0.7
1,123,852	-		IAI47_05310	0.74	+1.0
1,123,852	-		IAI47_05310	0.74	+1.0
1,123,852	-		IAI47_05310	0.74	+0.6
1,123,852	-		IAI47_05310	0.74	+0.4
1,123,852	-		IAI47_05310	0.74	+0.2
1,123,852	-		IAI47_05310	0.74	+1.0
1,123,984	+		IAI47_05310	0.78	+0.6
1,123,984	+		IAI47_05310	0.78	-0.4
1,123,985	-		IAI47_05310	0.78	-0.1
1,123,985	-		IAI47_05310	0.78	+0.7
1,123,985	-		IAI47_05310	0.78	-0.9
1,124,042	-		IAI47_05310	0.80	-0.5
1,124,089	-		IAI47_05310	0.81	+0.9
1,124,130	+		IAI47_05310	0.83	+1.2
1,124,130	+		IAI47_05310	0.83	-1.7
1,124,130	+		IAI47_05310	0.83	+0.4
1,124,131	-		IAI47_05310	0.83	+0.1
1,124,131	-		IAI47_05310	0.83	+2.2
1,124,142	+		IAI47_05310	0.83	-0.6
1,124,142	+		IAI47_05310	0.83	+1.4
1,124,143	-		IAI47_05310	0.83	+1.2
1,124,170	+		IAI47_05310	0.84	+1.6
1,124,170	+		IAI47_05310	0.84	+1.1
1,124,170	+		IAI47_05310	0.84	+1.9
1,124,171	-		IAI47_05310	0.84	-1.0
1,124,191	+		IAI47_05310	0.84	-0.4
1,124,191	+		IAI47_05310	0.84	-0.3
1,124,191	+		IAI47_05310	0.84	+1.4
1,124,192	-		IAI47_05310	0.85	-0.9
1,124,192	-		IAI47_05310	0.85	+0.9
1,124,194	+		IAI47_05310	0.85	-1.4
1,124,194	+		IAI47_05310	0.85	+0.7
1,124,194	+		IAI47_05310	0.85	+0.9
1,124,194	+		IAI47_05310	0.85	+0.9
1,124,194	+		IAI47_05310	0.85	+0.0
1,124,195	-		IAI47_05310	0.85	+1.6
1,124,205	+		IAI47_05310	0.85	-0.6
1,124,205	+		IAI47_05310	0.85	-0.3
1,124,205	+		IAI47_05310	0.85	-0.2
1,124,205	+		IAI47_05310	0.85	-0.4
1,124,205	+		IAI47_05310	0.85	+0.1
1,124,205	+		IAI47_05310	0.85	-0.8
1,124,205	+		IAI47_05310	0.85	-0.8
1,124,205	+		IAI47_05310	0.85	+0.8
1,124,205	+		IAI47_05310	0.85	-1.5
1,124,206	-		IAI47_05310	0.85	+2.3
1,124,206	-		IAI47_05310	0.85	+0.4
1,124,206	-		IAI47_05310	0.85	+0.1
1,124,206	-		IAI47_05310	0.85	+0.0
1,124,215	+		IAI47_05310	0.85	+0.1
1,124,216	-		IAI47_05310	0.85	+0.1
1,124,224	+		IAI47_05310	0.86	-0.4
1,124,224	+		IAI47_05310	0.86	-0.1
1,124,224	+		IAI47_05310	0.86	+1.6
1,124,225	-		IAI47_05310	0.86	+1.9
1,124,230	+		IAI47_05310	0.86	+0.9
1,124,230	+		IAI47_05310	0.86	-0.4
1,124,230	+		IAI47_05310	0.86	-0.7
1,124,266	+		IAI47_05310	0.87	+0.4
1,124,267	-		IAI47_05310	0.87	+1.1
1,124,267	-		IAI47_05310	0.87	+0.3
1,124,267	-		IAI47_05310	0.87	+0.8
1,124,267	-		IAI47_05310	0.87	-0.4
1,124,392	+				+0.2
1,124,445	+				+0.5
1,124,445	+				-1.3
1,124,445	+				-0.4
1,124,445	+				+0.7
1,124,445	+				+1.5
1,124,445	+				+0.2
1,124,445	+				-0.3
1,124,445	+				-0.8
1,124,445	+				+0.7
1,124,445	+				-0.9
1,124,445	+				+0.1
1,124,445	+				+0.5
1,124,445	+				+2.1
1,124,445	+				-0.0
1,124,445	+				-1.8
1,124,446	-				+0.7
1,124,446	-				-1.0
1,124,446	-				-3.0
1,124,446	-				+2.3
1,124,446	-				-0.5
1,124,446	-				+0.3
1,124,446	-				+0.8
1,124,446	-				+1.8
1,124,446	-				+0.4
1,124,446	-				-0.5
1,124,446	-				-0.0
1,124,446	-				+1.7
1,124,446	-				+0.6
1,124,446	-				+0.3
1,124,529	+				+1.9
1,124,530	-				+0.7
1,124,533	+				+0.1
1,124,533	+				-1.6
1,124,533	+				-0.4
1,124,533	+				-0.2
1,124,534	-				+0.7
1,124,534	-				+1.2
1,124,534	-				-0.7
1,124,542	+				-2.0
1,124,542	+				-0.7
1,124,543	-				-0.1
1,124,551	+				+1.9
1,124,551	+				-0.1
1,124,551	+				+0.3
1,124,551	+				+1.7
1,124,552	-				+0.8
1,124,552	-				+1.1
1,124,552	-				-0.0
1,124,552	-				+0.1
1,124,572	-				-0.0
1,124,594	-				+0.3
1,124,675	+				+0.9
1,124,675	+				-0.5
1,124,676	-				+1.3
1,124,697	+				-0.3
1,124,697	+				+0.9
1,124,697	+				-0.1
1,124,697	+				+0.9
1,124,697	+				+0.1
1,124,697	+				-1.1
1,124,697	+				+0.9
1,124,697	+				-1.2
1,124,697	+				-0.5
1,124,697	+				-1.4
1,124,697	+				+0.7
1,124,697	+				+0.2
1,124,697	+				-0.9
1,124,697	+				+0.5
1,124,697	+				+0.8
1,124,697	+				+1.4
1,124,697	+				+0.9
1,124,697	+				-1.1
1,124,697	+				-0.8
1,124,697	+				+0.9
1,124,697	+				-1.7
1,124,698	-				+3.2
1,124,698	-				-1.4
1,124,698	-				-0.6
1,124,698	-				+2.2
1,124,698	-				+0.5
1,124,698	-				-0.3
1,124,698	-				+0.1
1,124,698	-				+1.3
1,124,698	-				+0.9
1,124,698	-				+1.2
1,124,698	-				+1.4
1,124,700	+				+0.9
1,124,700	+				-0.0
1,124,700	+				+1.0
1,124,700	+				+0.2
1,124,701	-				+0.0
1,124,701	-				-0.3
1,124,701	-				-1.6
1,124,701	-				+0.7
1,124,701	-				-0.2
1,124,703	+				+0.6
1,124,756	+				-0.1
1,124,783	+				+0.4
1,124,784	-				-0.2
1,124,784	-				-0.7
1,124,784	-				-0.9
1,124,784	-				-1.8
1,124,830	-				-1.8
1,124,842	+				-0.2
1,124,842	+				-0.3
1,124,842	+				+1.1
1,124,843	-				+0.9
1,124,843	-				-0.1
1,124,843	-				+1.3
1,124,901	-				-0.1
1,124,913	-		IAI47_05315	0.11	-1.6
1,124,913	-		IAI47_05315	0.11	+0.7
1,124,945	+		IAI47_05315	0.17	-1.0
1,124,946	-		IAI47_05315	0.17	-0.1
1,124,946	-		IAI47_05315	0.17	-1.2
1,125,064	+		IAI47_05315	0.35	-2.0
1,125,064	+		IAI47_05315	0.35	-1.7
1,125,064	+		IAI47_05315	0.35	-1.6
1,125,065	-		IAI47_05315	0.36	-0.9
1,125,065	-		IAI47_05315	0.36	-1.7
1,125,065	-		IAI47_05315	0.36	+1.1
1,125,065	-		IAI47_05315	0.36	-3.8
1,125,084	-		IAI47_05315	0.39	-2.1
1,125,084	-		IAI47_05315	0.39	-0.2
1,125,116	+		IAI47_05315	0.44	-2.4
1,125,116	+		IAI47_05315	0.44	+0.4
1,125,116	+		IAI47_05315	0.44	-0.5
1,125,117	-		IAI47_05315	0.44	-1.0
1,125,117	-		IAI47_05315	0.44	-1.3
1,125,117	-		IAI47_05315	0.44	-2.3
1,125,117	-		IAI47_05315	0.44	-0.5
1,125,117	-		IAI47_05315	0.44	-0.1
1,125,117	-		IAI47_05315	0.44	-0.4
1,125,117	-		IAI47_05315	0.44	+1.0
1,125,117	-		IAI47_05315	0.44	-1.3
1,125,117	-		IAI47_05315	0.44	-2.4
1,125,158	-		IAI47_05315	0.50	-1.5
1,125,191	+		IAI47_05315	0.56	-2.8
1,125,192	-		IAI47_05315	0.56	+1.1
1,125,192	-		IAI47_05315	0.56	+0.1
1,125,239	+		IAI47_05315	0.63	-0.9
1,125,239	+		IAI47_05315	0.63	-0.3
1,125,239	+		IAI47_05315	0.63	-0.1
1,125,239	+		IAI47_05315	0.63	-2.4
1,125,239	+		IAI47_05315	0.63	-1.4
1,125,239	+		IAI47_05315	0.63	-2.7
1,125,240	-		IAI47_05315	0.63	-1.1
1,125,240	-		IAI47_05315	0.63	-1.4
1,125,261	+		IAI47_05315	0.67	-1.0
1,125,261	+		IAI47_05315	0.67	-2.9
1,125,290	+		IAI47_05315	0.71	-1.5
1,125,290	+		IAI47_05315	0.71	-0.5
1,125,290	+		IAI47_05315	0.71	-1.4
1,125,290	+		IAI47_05315	0.71	-1.4
1,125,291	-		IAI47_05315	0.71	+0.6
1,125,291	-		IAI47_05315	0.71	-0.1
1,125,291	-		IAI47_05315	0.71	-1.7
1,125,291	-		IAI47_05315	0.71	-1.1
1,125,291	-		IAI47_05315	0.71	-3.5
1,125,453	+				-0.0
1,125,454	-				-0.1
1,125,454	-				-2.9
1,125,470	+				-0.3
1,125,484	+				+1.0
1,125,484	+				+0.4
1,125,485	-				-0.4
1,125,514	+				+0.5
1,125,514	+				-0.6
1,125,514	+				-1.1
1,125,515	-				+1.1
1,125,515	-				-2.6
1,125,515	-				-1.4
1,125,527	+				-0.8
1,125,528	-				-0.2
1,125,546	+				-0.0
1,125,546	+				+0.6
1,125,547	-				-0.2
1,125,547	-				-2.0
1,125,547	-				+0.7
1,125,549	+				-1.2
1,125,550	-				+1.6
1,125,557	+				+0.3
1,125,557	+				-0.4
1,125,558	-				+1.0
1,125,558	-				-0.7
1,125,558	-				+0.5
1,125,558	-				+0.4
1,125,558	-				-0.3
1,125,563	+				+0.6
1,125,563	+				+1.0
1,125,564	-				+2.4
1,125,580	+				-0.2
1,125,584	+				+0.4
1,125,584	+				+0.3
1,125,595	+				-2.4
1,125,596	-				+0.7
1,125,596	-				-0.1
1,125,600	+				+1.0
1,125,600	+				-0.1
1,125,600	+				+0.3
1,125,600	+				-1.3
1,125,601	-				+0.2
1,125,601	-				-0.6
1,125,601	-				+0.4
1,125,601	-				-0.2
1,125,605	+				-1.7
1,125,605	+				-1.8
1,125,606	-				+1.2
1,125,606	-				-0.4
1,125,606	-				-1.2
1,125,606	-				+0.7
1,125,679	+				-0.3
1,125,680	-				-1.0
1,125,680	-				-0.9
1,125,685	+				-2.3
1,125,686	-				-1.8
1,125,686	-				-1.7
1,125,710	-				-0.7
1,125,710	-				-2.1
1,125,710	-				+0.1
1,125,742	+				-1.9
1,125,745	+				-3.0
1,125,746	-				-0.8
1,125,778	+		IAI47_05320	0.11	-0.4
1,125,779	-		IAI47_05320	0.11	-0.4
1,125,810	+		IAI47_05320	0.12	-0.7
1,125,810	+		IAI47_05320	0.12	-0.5
1,125,810	+		IAI47_05320	0.12	-0.7
1,125,810	+		IAI47_05320	0.12	-0.5
1,125,811	-		IAI47_05320	0.13	+0.7
1,125,811	-		IAI47_05320	0.13	-2.9
1,125,887	+		IAI47_05320	0.17	-0.2
1,125,887	+		IAI47_05320	0.17	-2.4
1,125,887	+		IAI47_05320	0.17	-2.4
1,125,887	+		IAI47_05320	0.17	+0.3
1,125,887	+		IAI47_05320	0.17	-2.7
1,125,887	+		IAI47_05320	0.17	+1.0
1,125,887	+		IAI47_05320	0.17	-2.8
1,125,887	+		IAI47_05320	0.17	-1.1
1,125,887	+		IAI47_05320	0.17	+0.9
1,125,887	+		IAI47_05320	0.17	-2.1
1,125,888	-		IAI47_05320	0.17	-0.8
1,125,888	-		IAI47_05320	0.17	-0.9
1,125,888	-		IAI47_05320	0.17	-0.5
1,125,888	-		IAI47_05320	0.17	-0.8
1,125,888	-		IAI47_05320	0.17	-0.2
1,125,888	-		IAI47_05320	0.17	+0.3
1,125,888	-		IAI47_05320	0.17	+0.7
1,125,888	-		IAI47_05320	0.17	+0.8
1,125,888	-		IAI47_05320	0.17	-0.6
1,125,927	+		IAI47_05320	0.19	-1.6
1,125,927	+		IAI47_05320	0.19	-1.1
1,125,927	+		IAI47_05320	0.19	-2.0
1,125,927	+		IAI47_05320	0.19	+0.4
1,125,927	+		IAI47_05320	0.19	-2.9
1,125,931	+		IAI47_05320	0.20	+0.6
1,125,931	+		IAI47_05320	0.20	+1.0
1,125,932	-		IAI47_05320	0.20	+0.3
1,125,932	-		IAI47_05320	0.20	+0.2
1,125,938	+		IAI47_05320	0.20	-2.6
1,125,939	-		IAI47_05320	0.20	-1.6
1,126,053	+		IAI47_05320	0.27	-1.5
1,126,088	-		IAI47_05320	0.29	+0.3
1,126,147	+		IAI47_05320	0.32	-0.0
1,126,147	+		IAI47_05320	0.32	-1.6
1,126,147	+		IAI47_05320	0.32	+0.5
1,126,147	+		IAI47_05320	0.32	-2.1
1,126,147	+		IAI47_05320	0.32	-2.0
1,126,148	-		IAI47_05320	0.33	-0.4
1,126,148	-		IAI47_05320	0.33	-1.4
1,126,148	-		IAI47_05320	0.33	-2.0
1,126,148	-		IAI47_05320	0.33	-0.9
1,126,151	+		IAI47_05320	0.33	-0.2
1,126,151	+		IAI47_05320	0.33	+0.5
1,126,151	+		IAI47_05320	0.33	-2.1
1,126,152	-		IAI47_05320	0.33	-3.0
1,126,152	-		IAI47_05320	0.33	-1.6
1,126,152	-		IAI47_05320	0.33	-0.4
1,126,184	+		IAI47_05320	0.35	+0.2
1,126,184	+		IAI47_05320	0.35	-0.1
1,126,184	+		IAI47_05320	0.35	-1.0
1,126,184	+		IAI47_05320	0.35	-0.8
1,126,184	+		IAI47_05320	0.35	-0.3
1,126,184	+		IAI47_05320	0.35	+1.4
1,126,184	+		IAI47_05320	0.35	-0.9
1,126,185	-		IAI47_05320	0.35	-0.5
1,126,185	-		IAI47_05320	0.35	-2.5
1,126,185	-		IAI47_05320	0.35	-0.4
1,126,233	+		IAI47_05320	0.38	-1.0
1,126,364	+		IAI47_05320	0.45	-2.6
1,126,364	+		IAI47_05320	0.45	-1.5
1,126,364	+		IAI47_05320	0.45	-2.1
1,126,365	-		IAI47_05320	0.45	-0.1
1,126,365	-		IAI47_05320	0.45	+0.1
1,126,365	-		IAI47_05320	0.45	+0.4
1,126,365	-		IAI47_05320	0.45	+0.1
1,126,365	-		IAI47_05320	0.45	-2.4
1,126,365	-		IAI47_05320	0.45	-1.1