Experiment: nitrogen source nitrate 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03100 and IAI47_03105 are separated by 70 nucleotides IAI47_03105 and IAI47_03110 are separated by 43 nucleotides IAI47_03110 and IAI47_03115 are separated by 438 nucleotides
IAI47_03100: IAI47_03100 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 640,492 to 643,344
_03100
IAI47_03105: IAI47_03105 - bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE, at 643,415 to 644,839
_03105
IAI47_03110: IAI47_03110 - accessory factor UbiK family protein, at 644,883 to 645,269
_03110
IAI47_03115: IAI47_03115 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 645,708 to 646,364
_03115
Position (kb) 643
644
645 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.477 kb on + strand, within IAI47_03100 at 642.478 kb on - strand, within IAI47_03100 at 642.478 kb on - strand, within IAI47_03100 at 642.478 kb on - strand, within IAI47_03100 at 642.485 kb on + strand, within IAI47_03100 at 642.485 kb on + strand, within IAI47_03100 at 642.485 kb on + strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.486 kb on - strand, within IAI47_03100 at 642.494 kb on - strand, within IAI47_03100 at 642.516 kb on + strand, within IAI47_03100 at 642.516 kb on + strand, within IAI47_03100 at 642.516 kb on + strand, within IAI47_03100 at 642.517 kb on - strand, within IAI47_03100 at 642.580 kb on - strand, within IAI47_03100 at 642.581 kb on - strand, within IAI47_03100 at 642.581 kb on - strand, within IAI47_03100 at 642.670 kb on + strand, within IAI47_03100 at 642.670 kb on + strand, within IAI47_03100 at 642.670 kb on + strand, within IAI47_03100 at 642.671 kb on - strand, within IAI47_03100 at 642.671 kb on - strand, within IAI47_03100 at 642.671 kb on - strand, within IAI47_03100 at 642.708 kb on + strand, within IAI47_03100 at 642.786 kb on + strand, within IAI47_03100 at 642.808 kb on + strand, within IAI47_03100 at 642.808 kb on + strand, within IAI47_03100 at 642.864 kb on - strand, within IAI47_03100 at 642.864 kb on - strand, within IAI47_03100 at 642.867 kb on - strand, within IAI47_03100 at 642.867 kb on - strand, within IAI47_03100 at 642.867 kb on - strand, within IAI47_03100 at 642.867 kb on - strand, within IAI47_03100 at 642.897 kb on + strand, within IAI47_03100 at 642.902 kb on + strand, within IAI47_03100 at 642.902 kb on + strand, within IAI47_03100 at 642.903 kb on - strand, within IAI47_03100 at 642.903 kb on - strand, within IAI47_03100 at 642.903 kb on - strand, within IAI47_03100 at 642.959 kb on + strand, within IAI47_03100 at 642.959 kb on + strand, within IAI47_03100 at 642.960 kb on - strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.984 kb on + strand, within IAI47_03100 at 642.985 kb on - strand, within IAI47_03100 at 642.996 kb on + strand, within IAI47_03100 at 642.997 kb on - strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.005 kb on + strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.006 kb on - strand, within IAI47_03100 at 643.020 kb on + strand, within IAI47_03100 at 643.050 kb on + strand, within IAI47_03100 at 643.069 kb on + strand at 643.069 kb on + strand at 643.069 kb on + strand at 643.069 kb on + strand at 643.079 kb on + strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.153 kb on + strand at 643.154 kb on - strand at 643.158 kb on + strand at 643.158 kb on + strand at 643.158 kb on + strand at 643.159 kb on - strand at 643.159 kb on - strand at 643.159 kb on - strand at 643.159 kb on - strand at 643.159 kb on - strand at 643.198 kb on + strand at 643.198 kb on + strand at 643.198 kb on + strand at 643.198 kb on + strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.199 kb on - strand at 643.270 kb on + strand at 643.270 kb on + strand at 643.271 kb on - strand at 643.271 kb on - strand at 643.271 kb on - strand at 643.271 kb on - strand at 643.332 kb on + strand at 643.351 kb on + strand at 643.372 kb on + strand at 644.850 kb on + strand at 644.850 kb on + strand at 644.850 kb on + strand at 644.851 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.892 kb on - strand at 644.892 kb on - strand at 644.892 kb on - strand at 645.285 kb on - strand at 645.307 kb on + strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.353 kb on - strand at 645.396 kb on + strand at 645.428 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM remove 642,477 + IAI47_03100 0.70 -0.2 642,477 + IAI47_03100 0.70 +0.6 642,477 + IAI47_03100 0.70 -2.3 642,477 + IAI47_03100 0.70 -0.2 642,477 + IAI47_03100 0.70 +1.1 642,477 + IAI47_03100 0.70 +0.7 642,477 + IAI47_03100 0.70 +1.3 642,477 + IAI47_03100 0.70 -0.4 642,478 - IAI47_03100 0.70 +0.4 642,478 - IAI47_03100 0.70 +0.7 642,478 - IAI47_03100 0.70 +0.5 642,485 + IAI47_03100 0.70 +0.4 642,485 + IAI47_03100 0.70 -1.6 642,485 + IAI47_03100 0.70 +0.8 642,486 - IAI47_03100 0.70 +0.7 642,486 - IAI47_03100 0.70 -0.9 642,486 - IAI47_03100 0.70 +0.1 642,486 - IAI47_03100 0.70 +2.3 642,486 - IAI47_03100 0.70 +0.8 642,486 - IAI47_03100 0.70 -0.0 642,494 - IAI47_03100 0.70 +1.1 642,516 + IAI47_03100 0.71 +1.0 642,516 + IAI47_03100 0.71 +1.2 642,516 + IAI47_03100 0.71 -0.4 642,517 - IAI47_03100 0.71 +1.8 642,580 - IAI47_03100 0.73 +0.4 642,581 - IAI47_03100 0.73 +2.4 642,581 - IAI47_03100 0.73 -0.4 642,670 + IAI47_03100 0.76 -0.5 642,670 + IAI47_03100 0.76 +0.2 642,670 + IAI47_03100 0.76 +1.0 642,671 - IAI47_03100 0.76 +0.7 642,671 - IAI47_03100 0.76 +0.2 642,671 - IAI47_03100 0.76 +1.1 642,708 + IAI47_03100 0.78 +1.6 642,786 + IAI47_03100 0.80 +2.1 642,808 + IAI47_03100 0.81 +0.2 642,808 + IAI47_03100 0.81 +0.5 642,864 - IAI47_03100 0.83 -1.2 642,864 - IAI47_03100 0.83 +1.7 642,867 - IAI47_03100 0.83 +2.1 642,867 - IAI47_03100 0.83 +0.7 642,867 - IAI47_03100 0.83 +0.9 642,867 - IAI47_03100 0.83 +0.9 642,897 + IAI47_03100 0.84 +1.6 642,902 + IAI47_03100 0.84 +1.3 642,902 + IAI47_03100 0.84 -2.8 642,903 - IAI47_03100 0.85 -0.7 642,903 - IAI47_03100 0.85 +0.4 642,903 - IAI47_03100 0.85 -1.4 642,959 + IAI47_03100 0.86 -0.0 642,959 + IAI47_03100 0.86 -1.1 642,960 - IAI47_03100 0.87 -0.7 642,984 + IAI47_03100 0.87 +1.9 642,984 + IAI47_03100 0.87 +1.1 642,984 + IAI47_03100 0.87 +1.5 642,984 + IAI47_03100 0.87 -1.0 642,984 + IAI47_03100 0.87 +1.0 642,985 - IAI47_03100 0.87 +1.7 642,996 + IAI47_03100 0.88 -0.6 642,997 - IAI47_03100 0.88 +1.3 643,005 + IAI47_03100 0.88 +1.0 643,005 + IAI47_03100 0.88 -0.8 643,005 + IAI47_03100 0.88 +0.9 643,005 + IAI47_03100 0.88 +1.5 643,005 + IAI47_03100 0.88 +0.9 643,006 - IAI47_03100 0.88 +0.8 643,006 - IAI47_03100 0.88 +3.1 643,006 - IAI47_03100 0.88 -0.2 643,006 - IAI47_03100 0.88 +1.6 643,006 - IAI47_03100 0.88 +0.6 643,020 + IAI47_03100 0.89 -0.4 643,050 + IAI47_03100 0.90 +0.4 643,069 + +2.0 643,069 + +0.3 643,069 + +2.1 643,069 + +1.8 643,079 + +0.8 643,080 - -0.1 643,080 - +0.6 643,080 - +0.7 643,080 - +0.7 643,080 - +1.2 643,080 - -1.0 643,080 - +0.9 643,153 + -0.9 643,154 - -0.3 643,158 + +0.6 643,158 + +0.8 643,158 + +0.9 643,159 - +0.3 643,159 - +1.3 643,159 - +0.6 643,159 - +0.3 643,159 - +0.8 643,198 + +1.8 643,198 + +0.8 643,198 + +0.9 643,198 + -0.2 643,199 - +1.7 643,199 - +0.5 643,199 - +0.1 643,199 - +0.8 643,199 - -1.4 643,199 - +2.3 643,270 + +1.8 643,270 + +1.4 643,271 - +0.8 643,271 - -0.6 643,271 - +1.0 643,271 - +0.9 643,332 + -0.0 643,351 + +0.3 643,372 + +0.7 644,850 + +1.0 644,850 + +0.3 644,850 + +0.6 644,851 - +1.3 644,882 - +0.8 644,882 - -0.9 644,882 - -0.0 644,882 - -1.6 644,882 - -2.2 644,882 - +0.6 644,882 - +0.1 644,884 + +0.8 644,884 + +0.7 644,884 + +0.3 644,884 + +0.5 644,884 + +0.5 644,885 - -1.7 644,885 - +0.0 644,885 - -1.2 644,885 - +0.6 644,885 - -3.4 644,885 - -2.4 644,885 - +0.7 644,891 + +1.9 644,891 + -0.1 644,891 + +1.2 644,891 + +1.0 644,892 - -0.2 644,892 - -0.1 644,892 - -0.3 645,285 - +0.3 645,307 + +0.5 645,308 - +0.9 645,308 - +0.5 645,308 - +1.0 645,315 + -1.2 645,315 + +0.6 645,315 + -0.4 645,315 + -0.7 645,315 + +0.9 645,315 + -0.0 645,316 - -0.2 645,316 - +0.6 645,316 - +0.1 645,316 - +1.1 645,316 - -1.0 645,318 + +0.9 645,318 + +1.5 645,318 + -2.6 645,318 + -0.1 645,318 + -1.7 645,319 - -0.5 645,319 - +0.1 645,319 - -0.2 645,319 - +0.1 645,325 + +0.1 645,325 + -1.9 645,325 + +0.4 645,325 + -1.5 645,326 - -0.1 645,326 - +0.1 645,326 - +1.1 645,326 - +0.9 645,331 + -1.3 645,331 + -0.0 645,331 + +0.7 645,331 + +0.8 645,331 + +1.1 645,331 + -1.3 645,331 + -0.8 645,332 - +1.3 645,332 - +0.6 645,332 - +0.1 645,332 - -1.1 645,353 - +0.1 645,396 + -0.1 645,428 + +1.0 645,430 + +0.6 645,430 + -1.2 645,430 + +0.7 645,430 + +0.0 645,430 + -0.1 645,658 + +1.2 645,658 + +0.8 645,658 + -0.4 645,658 + +0.9
Or see this region's nucleotide sequence