Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1528 and Ga0059261_1529 overlap by 4 nucleotides Ga0059261_1529 and Ga0059261_1530 overlap by 1 nucleotides Ga0059261_1530 and Ga0059261_1531 are separated by 186 nucleotides
Ga0059261_1528: Ga0059261_1528 - phosphoribosylformylglycinamidine synthase, purS protein, at 1,607,179 to 1,607,424
_1528
Ga0059261_1529: Ga0059261_1529 - phosphoribosylformylglycinamidine synthase I, at 1,607,421 to 1,608,086
_1529
Ga0059261_1530: Ga0059261_1530 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 1,608,086 to 1,608,784
_1530
Ga0059261_1531: Ga0059261_1531 - hypothetical protein, at 1,608,971 to 1,609,375
_1531
Position (kb)
1608
1609 Strain fitness (log2 ratio)
-1
0
1
2 at 1607.147 kb on + strand at 1608.203 kb on + strand, within Ga0059261_1530 at 1608.205 kb on + strand, within Ga0059261_1530 at 1608.205 kb on + strand, within Ga0059261_1530 at 1608.205 kb on + strand, within Ga0059261_1530 at 1608.206 kb on - strand, within Ga0059261_1530 at 1608.206 kb on - strand, within Ga0059261_1530 at 1608.206 kb on - strand, within Ga0059261_1530 at 1608.206 kb on - strand, within Ga0059261_1530 at 1608.747 kb on + strand at 1608.747 kb on + strand at 1608.748 kb on - strand at 1609.120 kb on + strand, within Ga0059261_1531 at 1609.121 kb on - strand, within Ga0059261_1531 at 1609.121 kb on - strand, within Ga0059261_1531 at 1609.121 kb on - strand, within Ga0059261_1531 at 1609.121 kb on - strand, within Ga0059261_1531 at 1609.121 kb on - strand, within Ga0059261_1531 at 1609.251 kb on + strand, within Ga0059261_1531 at 1609.251 kb on + strand, within Ga0059261_1531 at 1609.252 kb on - strand, within Ga0059261_1531 at 1609.469 kb on + strand at 1609.470 kb on - strand at 1609.470 kb on - strand at 1609.481 kb on + strand at 1609.501 kb on + strand at 1609.501 kb on + strand at 1609.501 kb on + strand at 1609.502 kb on - strand at 1609.597 kb on + strand at 1609.597 kb on + strand at 1609.598 kb on - strand at 1609.598 kb on - strand at 1609.683 kb on + strand at 1609.683 kb on + strand at 1609.684 kb on - strand at 1609.684 kb on - strand at 1609.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 1,607,147 + +0.6 1,608,203 + Ga0059261_1530 0.17 +1.0 1,608,205 + Ga0059261_1530 0.17 +0.1 1,608,205 + Ga0059261_1530 0.17 +0.4 1,608,205 + Ga0059261_1530 0.17 -0.3 1,608,206 - Ga0059261_1530 0.17 +0.4 1,608,206 - Ga0059261_1530 0.17 +0.1 1,608,206 - Ga0059261_1530 0.17 -0.2 1,608,206 - Ga0059261_1530 0.17 +1.4 1,608,747 + -0.2 1,608,747 + +0.8 1,608,748 - +0.1 1,609,120 + Ga0059261_1531 0.37 -0.6 1,609,121 - Ga0059261_1531 0.37 -0.1 1,609,121 - Ga0059261_1531 0.37 -0.3 1,609,121 - Ga0059261_1531 0.37 -1.2 1,609,121 - Ga0059261_1531 0.37 +0.3 1,609,121 - Ga0059261_1531 0.37 -0.5 1,609,251 + Ga0059261_1531 0.69 +0.2 1,609,251 + Ga0059261_1531 0.69 +0.7 1,609,252 - Ga0059261_1531 0.69 +2.6 1,609,469 + +0.6 1,609,470 - +1.2 1,609,470 - -0.8 1,609,481 + -0.0 1,609,501 + -0.4 1,609,501 + -1.2 1,609,501 + +0.6 1,609,502 - +0.4 1,609,597 + +0.4 1,609,597 + +1.0 1,609,598 - +0.4 1,609,598 - -0.1 1,609,683 + +0.3 1,609,683 + +0.1 1,609,684 - -0.2 1,609,684 - +0.4 1,609,753 - -0.1
Or see this region's nucleotide sequence