Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0954 and Ga0059261_0955 are separated by 102 nucleotides Ga0059261_0955 and Ga0059261_0956 are separated by 8 nucleotides Ga0059261_0956 and Ga0059261_0957 are separated by 83 nucleotides Ga0059261_0957 and Ga0059261_0958 are separated by 157 nucleotides
Ga0059261_0954: Ga0059261_0954 - tyrosyl-tRNA synthetase (EC 6.1.1.1), at 984,783 to 986,009
_0954
Ga0059261_0955: Ga0059261_0955 - PilZ domain, at 986,112 to 986,447
_0955
Ga0059261_0956: Ga0059261_0956 - Uncharacterized protein conserved in bacteria, at 986,456 to 986,869
_0956
Ga0059261_0957: Ga0059261_0957 - Protein of unknown function (DUF2798), at 986,953 to 987,210
_0957
Ga0059261_0958: Ga0059261_0958 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 987,368 to 989,425
_0958
Position (kb) 986
987 Strain fitness (log2 ratio) -1
0
1
2 at 986.054 kb on - strand at 986.054 kb on - strand at 986.054 kb on - strand at 986.066 kb on + strand at 986.066 kb on + strand at 986.118 kb on + strand at 986.118 kb on + strand at 986.118 kb on + strand at 986.118 kb on + strand at 986.118 kb on + strand at 986.119 kb on - strand at 986.119 kb on - strand at 986.193 kb on + strand, within Ga0059261_0955 at 986.194 kb on - strand, within Ga0059261_0955 at 986.412 kb on + strand, within Ga0059261_0955 at 986.412 kb on + strand, within Ga0059261_0955 at 986.412 kb on + strand, within Ga0059261_0955 at 986.412 kb on + strand, within Ga0059261_0955 at 986.412 kb on + strand, within Ga0059261_0955 at 986.412 kb on + strand, within Ga0059261_0955 at 986.413 kb on - strand, within Ga0059261_0955 at 986.413 kb on - strand, within Ga0059261_0955 at 986.413 kb on - strand, within Ga0059261_0955 at 986.413 kb on - strand, within Ga0059261_0955 at 986.413 kb on - strand, within Ga0059261_0955 at 986.415 kb on + strand at 986.415 kb on + strand at 986.415 kb on + strand at 986.416 kb on - strand at 986.416 kb on - strand at 986.416 kb on - strand at 986.450 kb on + strand at 986.450 kb on + strand at 986.450 kb on + strand at 986.450 kb on + strand at 986.451 kb on - strand at 986.451 kb on - strand at 986.451 kb on - strand at 986.451 kb on - strand at 986.457 kb on + strand at 986.457 kb on + strand at 986.457 kb on + strand at 986.457 kb on + strand at 986.458 kb on - strand at 986.458 kb on - strand at 986.637 kb on + strand, within Ga0059261_0956 at 986.638 kb on - strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.667 kb on + strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.668 kb on - strand, within Ga0059261_0956 at 986.907 kb on + strand at 986.908 kb on - strand at 986.908 kb on - strand at 986.908 kb on - strand at 986.908 kb on - strand at 986.908 kb on - strand at 986.908 kb on - strand at 986.908 kb on - strand at 986.996 kb on - strand, within Ga0059261_0957 at 987.158 kb on - strand, within Ga0059261_0957 at 987.158 kb on - strand, within Ga0059261_0957 at 987.213 kb on + strand at 987.213 kb on + strand at 987.213 kb on + strand at 987.213 kb on + strand at 987.213 kb on + strand at 987.214 kb on - strand at 987.214 kb on - strand at 987.214 kb on - strand at 987.214 kb on - strand at 987.415 kb on - strand at 987.415 kb on - strand at 987.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 986,054 - +0.4 986,054 - +1.0 986,054 - -1.6 986,066 + +0.6 986,066 + +0.4 986,118 + -0.1 986,118 + +0.8 986,118 + +0.4 986,118 + +0.0 986,118 + +0.0 986,119 - +0.9 986,119 - +0.1 986,193 + Ga0059261_0955 0.24 +0.3 986,194 - Ga0059261_0955 0.24 -0.6 986,412 + Ga0059261_0955 0.89 +0.8 986,412 + Ga0059261_0955 0.89 +0.3 986,412 + Ga0059261_0955 0.89 +0.0 986,412 + Ga0059261_0955 0.89 +0.2 986,412 + Ga0059261_0955 0.89 -0.1 986,412 + Ga0059261_0955 0.89 +0.4 986,413 - Ga0059261_0955 0.90 -1.4 986,413 - Ga0059261_0955 0.90 +1.0 986,413 - Ga0059261_0955 0.90 +0.3 986,413 - Ga0059261_0955 0.90 +0.3 986,413 - Ga0059261_0955 0.90 +0.2 986,415 + -0.7 986,415 + -0.0 986,415 + -0.3 986,416 - -1.0 986,416 - +1.4 986,416 - -0.3 986,450 + +0.1 986,450 + -0.7 986,450 + -0.9 986,450 + +0.2 986,451 - +0.4 986,451 - -0.4 986,451 - -0.2 986,451 - +2.0 986,457 + -0.2 986,457 + -0.8 986,457 + -0.6 986,457 + -0.2 986,458 - -0.5 986,458 - +0.5 986,637 + Ga0059261_0956 0.44 +0.6 986,638 - Ga0059261_0956 0.44 -0.3 986,667 + Ga0059261_0956 0.51 +0.2 986,667 + Ga0059261_0956 0.51 +0.0 986,667 + Ga0059261_0956 0.51 +0.2 986,667 + Ga0059261_0956 0.51 -0.0 986,667 + Ga0059261_0956 0.51 +0.3 986,667 + Ga0059261_0956 0.51 +0.4 986,667 + Ga0059261_0956 0.51 +0.3 986,667 + Ga0059261_0956 0.51 +0.4 986,667 + Ga0059261_0956 0.51 -0.5 986,667 + Ga0059261_0956 0.51 +0.3 986,667 + Ga0059261_0956 0.51 +0.3 986,667 + Ga0059261_0956 0.51 +1.2 986,668 - Ga0059261_0956 0.51 -0.4 986,668 - Ga0059261_0956 0.51 +1.2 986,668 - +1.5 986,668 - Ga0059261_0956 0.51 +0.4 986,668 - Ga0059261_0956 0.51 +0.5 986,668 - Ga0059261_0956 0.51 +0.2 986,668 - Ga0059261_0956 0.51 -0.3 986,668 - Ga0059261_0956 0.51 +0.1 986,668 - Ga0059261_0956 0.51 -0.0 986,668 - Ga0059261_0956 0.51 -0.9 986,668 - Ga0059261_0956 0.51 -0.0 986,668 - Ga0059261_0956 0.51 +0.0 986,668 - Ga0059261_0956 0.51 +0.2 986,668 - Ga0059261_0956 0.51 -0.3 986,668 - Ga0059261_0956 0.51 +0.4 986,907 + +0.2 986,908 - +1.0 986,908 - -0.5 986,908 - -1.6 986,908 - +0.5 986,908 - +0.1 986,908 - -0.1 986,908 - +0.2 986,996 - Ga0059261_0957 0.17 -0.5 987,158 - Ga0059261_0957 0.79 +0.1 987,158 - Ga0059261_0957 0.79 -1.0 987,213 + +1.3 987,213 + +0.0 987,213 + -0.0 987,213 + +0.4 987,213 + -1.0 987,214 - -0.3 987,214 - +1.0 987,214 - +0.8 987,214 - -0.1 987,415 - +0.3 987,415 - -0.4 987,415 - -0.4
Or see this region's nucleotide sequence