Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0903 and Ga0059261_0904 are separated by 18 nucleotides Ga0059261_0904 and Ga0059261_0905 overlap by 4 nucleotides Ga0059261_0905 and Ga0059261_0906 are separated by 21 nucleotides Ga0059261_0906 and Ga0059261_0907 overlap by 4 nucleotides Ga0059261_0907 and Ga0059261_0908 are separated by 121 nucleotides
Ga0059261_0903: Ga0059261_0903 - hypothetical protein, at 940,124 to 941,152
_0903
Ga0059261_0904: Ga0059261_0904 - hypothetical protein, at 941,171 to 941,491
_0904
Ga0059261_0905: Ga0059261_0905 - Protein of unknown function (DUF998), at 941,488 to 942,123
_0905
Ga0059261_0906: Ga0059261_0906 - Uncharacterized conserved protein, at 942,145 to 942,633
_0906
Ga0059261_0907: Ga0059261_0907 - Predicted transcriptional regulators, at 942,630 to 943,001
_0907
Ga0059261_0908: Ga0059261_0908 - chromate transporter, chromate ion transporter (CHR) family, at 943,123 to 944,481
_0908
Position (kb) 942
943 Strain fitness (log2 ratio) -2
-1
0
1
2 at 941.231 kb on + strand, within Ga0059261_0904 at 941.231 kb on + strand, within Ga0059261_0904 at 941.231 kb on + strand, within Ga0059261_0904 at 941.231 kb on + strand, within Ga0059261_0904 at 941.231 kb on + strand, within Ga0059261_0904 at 941.231 kb on + strand, within Ga0059261_0904 at 941.232 kb on - strand, within Ga0059261_0904 at 941.232 kb on - strand at 941.232 kb on - strand, within Ga0059261_0904 at 941.233 kb on + strand, within Ga0059261_0904 at 941.234 kb on - strand, within Ga0059261_0904 at 941.258 kb on + strand, within Ga0059261_0904 at 941.258 kb on + strand, within Ga0059261_0904 at 941.258 kb on + strand, within Ga0059261_0904 at 941.258 kb on + strand, within Ga0059261_0904 at 941.258 kb on + strand, within Ga0059261_0904 at 941.258 kb on + strand, within Ga0059261_0904 at 941.259 kb on - strand, within Ga0059261_0904 at 941.259 kb on - strand, within Ga0059261_0904 at 941.271 kb on + strand, within Ga0059261_0904 at 941.272 kb on - strand, within Ga0059261_0904 at 941.272 kb on - strand, within Ga0059261_0904 at 941.272 kb on - strand, within Ga0059261_0904 at 941.402 kb on + strand, within Ga0059261_0904 at 941.402 kb on + strand, within Ga0059261_0904 at 941.402 kb on + strand, within Ga0059261_0904 at 941.402 kb on + strand, within Ga0059261_0904 at 941.402 kb on + strand, within Ga0059261_0904 at 941.402 kb on + strand, within Ga0059261_0904 at 941.403 kb on - strand, within Ga0059261_0904 at 941.403 kb on - strand, within Ga0059261_0904 at 941.403 kb on - strand, within Ga0059261_0904 at 941.403 kb on - strand, within Ga0059261_0904 at 941.406 kb on - strand, within Ga0059261_0904 at 941.455 kb on + strand, within Ga0059261_0904 at 941.455 kb on + strand, within Ga0059261_0904 at 941.455 kb on + strand, within Ga0059261_0904 at 941.456 kb on - strand, within Ga0059261_0904 at 941.456 kb on - strand, within Ga0059261_0904 at 941.456 kb on - strand at 941.490 kb on - strand at 941.555 kb on + strand, within Ga0059261_0905 at 941.555 kb on + strand, within Ga0059261_0905 at 941.555 kb on + strand, within Ga0059261_0905 at 941.556 kb on - strand, within Ga0059261_0905 at 941.556 kb on - strand, within Ga0059261_0905 at 941.556 kb on - strand, within Ga0059261_0905 at 941.556 kb on - strand, within Ga0059261_0905 at 941.556 kb on - strand, within Ga0059261_0905 at 941.556 kb on - strand, within Ga0059261_0905 at 941.648 kb on - strand, within Ga0059261_0905 at 941.745 kb on + strand, within Ga0059261_0905 at 941.746 kb on - strand, within Ga0059261_0905 at 941.819 kb on + strand, within Ga0059261_0905 at 941.819 kb on + strand, within Ga0059261_0905 at 941.819 kb on + strand at 941.819 kb on + strand, within Ga0059261_0905 at 941.820 kb on - strand, within Ga0059261_0905 at 941.820 kb on - strand, within Ga0059261_0905 at 941.823 kb on + strand, within Ga0059261_0905 at 941.876 kb on + strand, within Ga0059261_0905 at 941.876 kb on + strand, within Ga0059261_0905 at 941.876 kb on + strand, within Ga0059261_0905 at 941.877 kb on - strand, within Ga0059261_0905 at 941.877 kb on - strand, within Ga0059261_0905 at 941.949 kb on + strand, within Ga0059261_0905 at 941.949 kb on + strand, within Ga0059261_0905 at 942.108 kb on + strand at 942.109 kb on - strand at 942.109 kb on - strand at 942.146 kb on + strand at 942.146 kb on + strand at 942.146 kb on + strand at 942.146 kb on + strand at 942.147 kb on - strand at 942.147 kb on - strand at 942.147 kb on - strand at 942.269 kb on + strand, within Ga0059261_0906 at 942.270 kb on - strand, within Ga0059261_0906 at 942.270 kb on - strand, within Ga0059261_0906 at 942.302 kb on + strand, within Ga0059261_0906 at 942.302 kb on + strand, within Ga0059261_0906 at 942.303 kb on - strand, within Ga0059261_0906 at 942.398 kb on + strand, within Ga0059261_0906 at 942.398 kb on + strand, within Ga0059261_0906 at 942.399 kb on - strand, within Ga0059261_0906 at 942.399 kb on - strand, within Ga0059261_0906 at 942.399 kb on - strand, within Ga0059261_0906 at 942.399 kb on - strand, within Ga0059261_0906 at 942.399 kb on - strand, within Ga0059261_0906 at 942.576 kb on + strand at 942.664 kb on + strand at 942.664 kb on + strand at 942.665 kb on - strand at 942.665 kb on - strand at 942.665 kb on - strand at 942.665 kb on - strand at 942.665 kb on - strand at 942.757 kb on + strand, within Ga0059261_0907 at 942.757 kb on + strand, within Ga0059261_0907 at 942.757 kb on + strand, within Ga0059261_0907 at 942.757 kb on + strand, within Ga0059261_0907 at 942.757 kb on + strand, within Ga0059261_0907 at 942.757 kb on + strand, within Ga0059261_0907 at 942.757 kb on + strand, within Ga0059261_0907 at 942.758 kb on - strand, within Ga0059261_0907 at 942.758 kb on - strand, within Ga0059261_0907 at 942.850 kb on + strand, within Ga0059261_0907 at 942.850 kb on + strand, within Ga0059261_0907 at 942.850 kb on + strand, within Ga0059261_0907 at 942.851 kb on - strand, within Ga0059261_0907 at 943.007 kb on + strand at 943.007 kb on + strand at 943.007 kb on + strand at 943.007 kb on + strand at 943.007 kb on + strand at 943.007 kb on + strand at 943.008 kb on - strand at 943.008 kb on - strand at 943.008 kb on - strand at 943.008 kb on - strand at 943.008 kb on - strand at 943.008 kb on - strand at 943.008 kb on - strand at 943.008 kb on - strand at 943.008 kb on - strand at 943.035 kb on - strand at 943.052 kb on - strand at 943.120 kb on + strand at 943.120 kb on + strand at 943.121 kb on - strand at 943.140 kb on + strand at 943.140 kb on + strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.177 kb on + strand at 943.177 kb on + strand at 943.178 kb on - strand at 943.178 kb on - strand at 943.542 kb on - strand, within Ga0059261_0908 at 943.605 kb on + strand, within Ga0059261_0908 at 943.606 kb on - strand, within Ga0059261_0908
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 941,231 + Ga0059261_0904 0.19 +0.5 941,231 + Ga0059261_0904 0.19 +0.5 941,231 + Ga0059261_0904 0.19 -1.2 941,231 + Ga0059261_0904 0.19 -0.0 941,231 + Ga0059261_0904 0.19 +0.2 941,231 + Ga0059261_0904 0.19 +1.2 941,232 - Ga0059261_0904 0.19 -0.0 941,232 - +2.0 941,232 - Ga0059261_0904 0.19 -0.5 941,233 + Ga0059261_0904 0.19 +0.3 941,234 - Ga0059261_0904 0.20 +1.4 941,258 + Ga0059261_0904 0.27 -1.0 941,258 + Ga0059261_0904 0.27 -0.0 941,258 + Ga0059261_0904 0.27 +1.5 941,258 + Ga0059261_0904 0.27 +1.0 941,258 + Ga0059261_0904 0.27 -1.0 941,258 + Ga0059261_0904 0.27 -1.0 941,259 - Ga0059261_0904 0.27 +0.4 941,259 - Ga0059261_0904 0.27 -0.2 941,271 + Ga0059261_0904 0.31 -1.2 941,272 - Ga0059261_0904 0.31 -0.3 941,272 - Ga0059261_0904 0.31 +0.7 941,272 - Ga0059261_0904 0.31 -0.5 941,402 + Ga0059261_0904 0.72 -0.9 941,402 + Ga0059261_0904 0.72 +0.2 941,402 + Ga0059261_0904 0.72 -0.5 941,402 + Ga0059261_0904 0.72 -0.2 941,402 + Ga0059261_0904 0.72 +0.4 941,402 + Ga0059261_0904 0.72 -0.3 941,403 - Ga0059261_0904 0.72 -0.2 941,403 - Ga0059261_0904 0.72 +0.5 941,403 - Ga0059261_0904 0.72 +2.0 941,403 - Ga0059261_0904 0.72 -0.5 941,406 - Ga0059261_0904 0.73 -0.2 941,455 + Ga0059261_0904 0.88 +0.2 941,455 + Ga0059261_0904 0.88 -0.9 941,455 + Ga0059261_0904 0.88 -0.3 941,456 - Ga0059261_0904 0.89 -0.2 941,456 - Ga0059261_0904 0.89 +0.4 941,456 - +1.0 941,490 - +0.3 941,555 + Ga0059261_0905 0.11 -0.8 941,555 + Ga0059261_0905 0.11 -0.6 941,555 + Ga0059261_0905 0.11 -0.9 941,556 - Ga0059261_0905 0.11 +0.7 941,556 - Ga0059261_0905 0.11 -0.0 941,556 - Ga0059261_0905 0.11 +0.0 941,556 - Ga0059261_0905 0.11 -1.6 941,556 - Ga0059261_0905 0.11 -0.4 941,556 - Ga0059261_0905 0.11 +1.3 941,648 - Ga0059261_0905 0.25 -0.4 941,745 + Ga0059261_0905 0.40 +1.2 941,746 - Ga0059261_0905 0.41 -0.6 941,819 + Ga0059261_0905 0.52 -0.1 941,819 + Ga0059261_0905 0.52 -0.6 941,819 + -0.0 941,819 + Ga0059261_0905 0.52 +0.3 941,820 - Ga0059261_0905 0.52 -1.0 941,820 - Ga0059261_0905 0.52 -0.4 941,823 + Ga0059261_0905 0.53 +0.0 941,876 + Ga0059261_0905 0.61 -0.1 941,876 + Ga0059261_0905 0.61 +0.4 941,876 + Ga0059261_0905 0.61 -1.0 941,877 - Ga0059261_0905 0.61 +0.2 941,877 - Ga0059261_0905 0.61 -0.3 941,949 + Ga0059261_0905 0.72 -0.6 941,949 + Ga0059261_0905 0.72 -0.6 942,108 + +0.3 942,109 - -0.1 942,109 - -0.6 942,146 + -0.3 942,146 + +0.3 942,146 + +0.1 942,146 + -0.4 942,147 - -1.3 942,147 - -1.4 942,147 - +0.1 942,269 + Ga0059261_0906 0.25 +0.7 942,270 - Ga0059261_0906 0.26 +0.6 942,270 - Ga0059261_0906 0.26 +0.2 942,302 + Ga0059261_0906 0.32 -0.3 942,302 + Ga0059261_0906 0.32 +0.2 942,303 - Ga0059261_0906 0.32 +0.3 942,398 + Ga0059261_0906 0.52 +1.0 942,398 + Ga0059261_0906 0.52 +0.0 942,399 - Ga0059261_0906 0.52 +0.3 942,399 - Ga0059261_0906 0.52 +1.0 942,399 - Ga0059261_0906 0.52 +0.3 942,399 - Ga0059261_0906 0.52 +1.8 942,399 - Ga0059261_0906 0.52 +0.3 942,576 + +0.4 942,664 + -0.6 942,664 + +0.4 942,665 - -0.5 942,665 - -0.8 942,665 - +0.4 942,665 - +0.1 942,665 - +0.5 942,757 + Ga0059261_0907 0.34 +1.1 942,757 + Ga0059261_0907 0.34 -0.0 942,757 + Ga0059261_0907 0.34 +0.4 942,757 + Ga0059261_0907 0.34 -0.2 942,757 + Ga0059261_0907 0.34 +0.4 942,757 + Ga0059261_0907 0.34 -0.3 942,757 + Ga0059261_0907 0.34 +0.5 942,758 - Ga0059261_0907 0.34 +1.0 942,758 - Ga0059261_0907 0.34 +0.0 942,850 + Ga0059261_0907 0.59 +1.1 942,850 + Ga0059261_0907 0.59 -2.5 942,850 + Ga0059261_0907 0.59 -0.9 942,851 - Ga0059261_0907 0.59 -0.1 943,007 + +0.5 943,007 + -0.9 943,007 + +0.8 943,007 + -0.5 943,007 + -0.3 943,007 + -0.1 943,008 - -0.6 943,008 - -1.8 943,008 - +0.2 943,008 - -0.5 943,008 - -0.3 943,008 - -0.6 943,008 - -0.5 943,008 - +0.3 943,008 - -0.1 943,035 - +0.4 943,052 - -1.4 943,120 + -0.3 943,120 + -0.6 943,121 - +1.0 943,140 + +0.0 943,140 + +0.0 943,141 - +1.4 943,141 - -1.4 943,177 + -0.2 943,177 + +0.7 943,178 - -0.2 943,178 - +0.6 943,542 - Ga0059261_0908 0.31 -0.2 943,605 + Ga0059261_0908 0.35 +0.3 943,606 - Ga0059261_0908 0.36 -0.1
Or see this region's nucleotide sequence