Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0852

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0851 and Ga0059261_0852 are separated by 288 nucleotidesGa0059261_0852 and Ga0059261_0853 are separated by 135 nucleotidesGa0059261_0853 and Ga0059261_0854 are separated by 35 nucleotides Ga0059261_0851: Ga0059261_0851 - Alpha/beta hydrolase family, at 891,255 to 892,214 _0851 Ga0059261_0852: Ga0059261_0852 - Transcriptional regulators, at 892,503 to 892,979 _0852 Ga0059261_0853: Ga0059261_0853 - peroxiredoxin, Ohr subfamily, at 893,115 to 893,540 _0853 Ga0059261_0854: Ga0059261_0854 - Arabinose efflux permease, at 893,576 to 894,859 _0854 Position (kb) 892 893Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.521 kb on - strand, within Ga0059261_0851at 891.521 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.554 kb on + strand, within Ga0059261_0851at 891.554 kb on + strand, within Ga0059261_0851at 891.555 kb on - strand, within Ga0059261_0851at 891.601 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.800 kb on - strand, within Ga0059261_0851at 891.800 kb on - strand, within Ga0059261_0851at 891.869 kb on - strand, within Ga0059261_0851at 891.934 kb on + strand, within Ga0059261_0851at 891.934 kb on + strand, within Ga0059261_0851at 891.934 kb on + strand, within Ga0059261_0851at 891.934 kb on + strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.935 kb on - strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.940 kb on + strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 891.941 kb on - strand, within Ga0059261_0851at 892.008 kb on - strand, within Ga0059261_0851at 892.021 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.105 kb on + strand, within Ga0059261_0851at 892.106 kb on - strand, within Ga0059261_0851at 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.203 kb on + strandat 892.204 kb on - strandat 892.204 kb on - strandat 892.204 kb on - strandat 892.204 kb on - strandat 892.361 kb on + strandat 892.361 kb on + strandat 892.361 kb on + strandat 892.362 kb on - strandat 892.362 kb on - strandat 892.362 kb on - strandat 892.362 kb on - strandat 892.404 kb on - strandat 892.404 kb on - strandat 892.444 kb on + strandat 892.444 kb on + strandat 892.445 kb on - strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.449 kb on + strandat 892.450 kb on - strandat 892.450 kb on - strandat 892.538 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.546 kb on + strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.547 kb on - strandat 892.849 kb on + strand, within Ga0059261_0852at 892.849 kb on + strand, within Ga0059261_0852at 892.849 kb on + strand, within Ga0059261_0852at 892.849 kb on + strand, within Ga0059261_0852at 892.850 kb on - strand, within Ga0059261_0852at 892.850 kb on - strand, within Ga0059261_0852at 892.850 kb on - strand, within Ga0059261_0852at 892.850 kb on - strand, within Ga0059261_0852at 892.858 kb on + strand, within Ga0059261_0852at 892.859 kb on - strand, within Ga0059261_0852at 892.891 kb on + strand, within Ga0059261_0852at 892.891 kb on + strand, within Ga0059261_0852at 892.891 kb on + strand, within Ga0059261_0852at 892.891 kb on + strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.892 kb on - strand, within Ga0059261_0852at 892.922 kb on - strand, within Ga0059261_0852at 892.930 kb on + strand, within Ga0059261_0852at 892.930 kb on + strand, within Ga0059261_0852at 892.931 kb on - strand, within Ga0059261_0852at 892.931 kb on - strand, within Ga0059261_0852at 893.066 kb on + strandat 893.067 kb on - strandat 893.067 kb on - strandat 893.067 kb on - strandat 893.067 kb on - strandat 893.067 kb on - strandat 893.127 kb on + strandat 893.127 kb on + strandat 893.128 kb on - strandat 893.128 kb on - strandat 893.274 kb on + strand, within Ga0059261_0853at 893.487 kb on + strand, within Ga0059261_0853at 893.487 kb on + strand, within Ga0059261_0853at 893.488 kb on - strand, within Ga0059261_0853at 893.616 kb on + strandat 893.616 kb on + strandat 893.616 kb on + strandat 893.705 kb on - strand, within Ga0059261_0854at 893.841 kb on + strand, within Ga0059261_0854at 893.871 kb on + strand, within Ga0059261_0854at 893.872 kb on - strand, within Ga0059261_0854at 893.872 kb on - strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.907 kb on + strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.908 kb on - strand, within Ga0059261_0854at 893.968 kb on + strand, within Ga0059261_0854at 893.968 kb on + strand, within Ga0059261_0854at 893.969 kb on - strand, within Ga0059261_0854at 893.969 kb on - strand, within Ga0059261_0854

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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891,520 + Ga0059261_0851 0.28 -0.1
891,520 + Ga0059261_0851 0.28 +1.0
891,520 + Ga0059261_0851 0.28 -2.0
891,520 + Ga0059261_0851 0.28 -0.4
891,521 - Ga0059261_0851 0.28 +0.8
891,521 - Ga0059261_0851 0.28 +0.5
891,524 - Ga0059261_0851 0.28 -0.4
891,524 - Ga0059261_0851 0.28 +0.3
891,524 - Ga0059261_0851 0.28 +0.5
891,554 + Ga0059261_0851 0.31 -0.2
891,554 + Ga0059261_0851 0.31 +1.0
891,555 - Ga0059261_0851 0.31 +0.2
891,601 + Ga0059261_0851 0.36 -0.0
891,799 + Ga0059261_0851 0.57 -0.2
891,799 + Ga0059261_0851 0.57 +0.0
891,799 + Ga0059261_0851 0.57 -0.0
891,799 + Ga0059261_0851 0.57 +1.0
891,799 + Ga0059261_0851 0.57 +0.1
891,799 + Ga0059261_0851 0.57 -0.6
891,799 + Ga0059261_0851 0.57 +1.0
891,800 - Ga0059261_0851 0.57 -0.1
891,800 - Ga0059261_0851 0.57 -0.6
891,869 - Ga0059261_0851 0.64 +0.4
891,934 + Ga0059261_0851 0.71 -1.6
891,934 + Ga0059261_0851 0.71 -0.2
891,934 + Ga0059261_0851 0.71 +0.5
891,934 + Ga0059261_0851 0.71 +0.5
891,935 - Ga0059261_0851 0.71 -1.1
891,935 - Ga0059261_0851 0.71 +0.4
891,935 - Ga0059261_0851 0.71 -0.4
891,935 - Ga0059261_0851 0.71 -0.3
891,935 - Ga0059261_0851 0.71 -0.0
891,940 + Ga0059261_0851 0.71 +0.0
891,940 + Ga0059261_0851 0.71 +0.1
891,940 + Ga0059261_0851 0.71 +0.1
891,940 + Ga0059261_0851 0.71 -0.4
891,940 + Ga0059261_0851 0.71 -0.1
891,940 + Ga0059261_0851 0.71 -0.4
891,940 + Ga0059261_0851 0.71 -1.5
891,940 + Ga0059261_0851 0.71 +0.2
891,940 + Ga0059261_0851 0.71 -0.1
891,940 + Ga0059261_0851 0.71 +0.1
891,940 + Ga0059261_0851 0.71 -0.0
891,940 + Ga0059261_0851 0.71 +0.1
891,940 + Ga0059261_0851 0.71 +0.1
891,940 + Ga0059261_0851 0.71 -0.7
891,940 + Ga0059261_0851 0.71 +0.1
891,940 + Ga0059261_0851 0.71 -0.2
891,940 + Ga0059261_0851 0.71 +0.6
891,940 + Ga0059261_0851 0.71 -0.3
891,940 + Ga0059261_0851 0.71 -0.2
891,940 + Ga0059261_0851 0.71 +0.6
891,940 + Ga0059261_0851 0.71 -0.1
891,940 + Ga0059261_0851 0.71 -0.2
891,941 - Ga0059261_0851 0.71 +0.1
891,941 - Ga0059261_0851 0.71 +1.1
891,941 - Ga0059261_0851 0.71 +0.6
891,941 - Ga0059261_0851 0.71 -0.4
891,941 - Ga0059261_0851 0.71 -0.3
891,941 - Ga0059261_0851 0.71 -0.1
891,941 - Ga0059261_0851 0.71 +0.8
891,941 - Ga0059261_0851 0.71 -1.3
891,941 - Ga0059261_0851 0.71 +0.4
891,941 - Ga0059261_0851 0.71 -0.4
891,941 - Ga0059261_0851 0.71 -0.4
891,941 - Ga0059261_0851 0.71 -0.9
891,941 - Ga0059261_0851 0.71 +0.1
892,008 - Ga0059261_0851 0.78 +0.7
892,021 + Ga0059261_0851 0.80 +0.4
892,105 + Ga0059261_0851 0.89 -0.0
892,105 + Ga0059261_0851 0.89 -0.8
892,105 + Ga0059261_0851 0.89 -1.3
892,105 + Ga0059261_0851 0.89 +0.1
892,105 + Ga0059261_0851 0.89 -0.1
892,105 + Ga0059261_0851 0.89 +0.4
892,106 - Ga0059261_0851 0.89 +0.3
892,203 + -0.4
892,203 + -0.7
892,203 + +0.1
892,203 + -0.3
892,203 + -0.2
892,203 + -0.1
892,204 - -0.2
892,204 - -0.5
892,204 - -0.1
892,204 - -0.1
892,361 + -0.4
892,361 + -0.4
892,361 + +0.5
892,362 - +0.3
892,362 - +1.0
892,362 - +0.6
892,362 - +0.3
892,404 - -0.4
892,404 - -0.1
892,444 + +2.0
892,444 + -0.3
892,445 - -0.6
892,449 + -0.2
892,449 + +0.8
892,449 + +0.0
892,449 + -0.3
892,449 + +1.1
892,449 + +0.1
892,450 - +2.0
892,450 - +1.6
892,538 + -0.2
892,546 + -0.2
892,546 + -0.1
892,546 + -1.1
892,546 + -0.8
892,546 + -2.1
892,546 + -0.1
892,546 + -1.7
892,547 - +0.5
892,547 - -1.2
892,547 - +0.5
892,547 - -0.3
892,547 - -0.4
892,547 - -0.5
892,849 + Ga0059261_0852 0.73 -0.1
892,849 + Ga0059261_0852 0.73 -0.7
892,849 + Ga0059261_0852 0.73 -0.5
892,849 + Ga0059261_0852 0.73 -1.7
892,850 - Ga0059261_0852 0.73 -0.9
892,850 - Ga0059261_0852 0.73 +0.3
892,850 - Ga0059261_0852 0.73 -0.9
892,850 - Ga0059261_0852 0.73 -2.6
892,858 + Ga0059261_0852 0.74 -1.5
892,859 - Ga0059261_0852 0.75 -0.4
892,891 + Ga0059261_0852 0.81 -0.0
892,891 + Ga0059261_0852 0.81 -3.0
892,891 + Ga0059261_0852 0.81 -0.8
892,891 + Ga0059261_0852 0.81 -0.3
892,892 - Ga0059261_0852 0.82 +1.5
892,892 - Ga0059261_0852 0.82 +0.6
892,892 - Ga0059261_0852 0.82 -1.4
892,892 - Ga0059261_0852 0.82 -0.3
892,892 - Ga0059261_0852 0.82 -1.0
892,922 - Ga0059261_0852 0.88 -1.2
892,930 + Ga0059261_0852 0.90 -0.8
892,930 + Ga0059261_0852 0.90 -1.5
892,931 - Ga0059261_0852 0.90 -1.4
892,931 - Ga0059261_0852 0.90 -0.2
893,066 + +0.4
893,067 - -1.0
893,067 - +1.0
893,067 - +1.0
893,067 - +1.3
893,067 - +0.6
893,127 + +0.1
893,127 + +0.6
893,128 - -0.6
893,128 - +1.1
893,274 + Ga0059261_0853 0.37 +0.2
893,487 + Ga0059261_0853 0.87 -0.9
893,487 + Ga0059261_0853 0.87 +0.7
893,488 - Ga0059261_0853 0.88 -0.3
893,616 + -0.2
893,616 + -0.2
893,616 + -0.4
893,705 - Ga0059261_0854 0.10 +0.1
893,841 + Ga0059261_0854 0.21 -0.2
893,871 + Ga0059261_0854 0.23 +0.1
893,872 - Ga0059261_0854 0.23 -0.4
893,872 - Ga0059261_0854 0.23 -0.9
893,907 + Ga0059261_0854 0.26 -0.7
893,907 + Ga0059261_0854 0.26 +1.6
893,907 + Ga0059261_0854 0.26 -0.4
893,907 + Ga0059261_0854 0.26 -0.4
893,907 + Ga0059261_0854 0.26 +0.0
893,908 - Ga0059261_0854 0.26 +0.2
893,908 - Ga0059261_0854 0.26 -1.7
893,908 - Ga0059261_0854 0.26 -0.6
893,908 - Ga0059261_0854 0.26 +0.1
893,908 - Ga0059261_0854 0.26 -0.7
893,968 + Ga0059261_0854 0.31 +0.1
893,968 + Ga0059261_0854 0.31 -0.2
893,969 - Ga0059261_0854 0.31 +0.1
893,969 - Ga0059261_0854 0.31 -0.3

Or see this region's nucleotide sequence