Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0816

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0815 and Ga0059261_0816 are separated by 161 nucleotidesGa0059261_0816 and Ga0059261_0817 are separated by 43 nucleotides Ga0059261_0815: Ga0059261_0815 - Uncharacterized protein involved in tellurite resistance, at 856,639 to 857,847 _0815 Ga0059261_0816: Ga0059261_0816 - hypothetical protein, at 858,009 to 858,179 _0816 Ga0059261_0817: Ga0059261_0817 - GTP-binding protein TypA/BipA, at 858,223 to 860,037 _0817 Position (kb) 858 859Strain fitness (log2 ratio) -2 -1 0 1 2at 857.079 kb on - strand, within Ga0059261_0815at 857.102 kb on + strand, within Ga0059261_0815at 857.102 kb on + strand, within Ga0059261_0815at 857.102 kb on + strand, within Ga0059261_0815at 857.158 kb on - strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strandat 857.261 kb on + strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.414 kb on + strand, within Ga0059261_0815at 857.415 kb on - strand, within Ga0059261_0815at 857.908 kb on - strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.933 kb on - strandat 857.933 kb on - strandat 857.982 kb on + strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.987 kb on + strandat 857.987 kb on + strandat 857.987 kb on + strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.997 kb on - strandat 858.152 kb on - strand, within Ga0059261_0816at 858.152 kb on - strand, within Ga0059261_0816at 858.152 kb on - strand, within Ga0059261_0816at 858.477 kb on + strand, within Ga0059261_0817at 858.478 kb on - strand, within Ga0059261_0817at 858.706 kb on + strand, within Ga0059261_0817at 858.706 kb on + strand, within Ga0059261_0817

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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857,079 - Ga0059261_0815 0.36 +0.8
857,102 + Ga0059261_0815 0.38 +0.3
857,102 + Ga0059261_0815 0.38 -0.2
857,102 + Ga0059261_0815 0.38 +0.1
857,158 - Ga0059261_0815 0.43 -0.0
857,159 + Ga0059261_0815 0.43 +0.1
857,159 + Ga0059261_0815 0.43 +0.7
857,159 + Ga0059261_0815 0.43 -0.0
857,159 + Ga0059261_0815 0.43 +0.5
857,159 + Ga0059261_0815 0.43 -0.5
857,159 + Ga0059261_0815 0.43 -0.5
857,159 + Ga0059261_0815 0.43 +0.3
857,160 - Ga0059261_0815 0.43 +1.5
857,160 - Ga0059261_0815 0.43 -0.4
857,160 - Ga0059261_0815 0.43 +0.1
857,160 - Ga0059261_0815 0.43 -1.4
857,160 - Ga0059261_0815 0.43 -0.3
857,160 - Ga0059261_0815 0.43 -0.7
857,160 - Ga0059261_0815 0.43 -0.2
857,160 - Ga0059261_0815 0.43 +0.6
857,160 - Ga0059261_0815 0.43 +0.0
857,261 + Ga0059261_0815 0.51 +0.1
857,261 + Ga0059261_0815 0.51 +0.5
857,261 + Ga0059261_0815 0.51 +0.9
857,261 + Ga0059261_0815 0.51 +0.0
857,261 + Ga0059261_0815 0.51 +0.4
857,261 + Ga0059261_0815 0.51 -0.9
857,261 + -0.1
857,261 + Ga0059261_0815 0.51 +0.8
857,262 - Ga0059261_0815 0.52 +0.1
857,262 - Ga0059261_0815 0.52 +0.2
857,262 - Ga0059261_0815 0.52 +0.1
857,262 - Ga0059261_0815 0.52 -0.6
857,262 - Ga0059261_0815 0.52 +1.6
857,262 - Ga0059261_0815 0.52 +0.6
857,262 - Ga0059261_0815 0.52 +0.7
857,262 - Ga0059261_0815 0.52 +0.5
857,262 - Ga0059261_0815 0.52 -0.8
857,262 - Ga0059261_0815 0.52 +0.5
857,400 + Ga0059261_0815 0.63 +1.2
857,400 + Ga0059261_0815 0.63 +0.1
857,400 + Ga0059261_0815 0.63 +0.4
857,400 + Ga0059261_0815 0.63 +0.6
857,400 + Ga0059261_0815 0.63 +0.4
857,400 + Ga0059261_0815 0.63 +0.0
857,400 + Ga0059261_0815 0.63 +0.3
857,400 + Ga0059261_0815 0.63 +1.7
857,400 + Ga0059261_0815 0.63 +0.8
857,400 + Ga0059261_0815 0.63 +0.5
857,400 + Ga0059261_0815 0.63 +0.3
857,401 - Ga0059261_0815 0.63 +0.5
857,401 - Ga0059261_0815 0.63 +0.3
857,401 - Ga0059261_0815 0.63 +0.2
857,401 - Ga0059261_0815 0.63 +0.9
857,401 - Ga0059261_0815 0.63 +0.5
857,401 - Ga0059261_0815 0.63 +0.4
857,401 - Ga0059261_0815 0.63 -0.6
857,402 + Ga0059261_0815 0.63 +0.4
857,402 + Ga0059261_0815 0.63 -0.6
857,402 + Ga0059261_0815 0.63 +0.4
857,402 + Ga0059261_0815 0.63 +0.4
857,402 + Ga0059261_0815 0.63 +2.1
857,402 + Ga0059261_0815 0.63 +1.2
857,403 - Ga0059261_0815 0.63 -1.1
857,403 - Ga0059261_0815 0.63 +0.9
857,403 - Ga0059261_0815 0.63 +0.2
857,403 - Ga0059261_0815 0.63 -0.0
857,403 - Ga0059261_0815 0.63 +0.8
857,403 - Ga0059261_0815 0.63 +0.5
857,403 - Ga0059261_0815 0.63 +0.3
857,403 - Ga0059261_0815 0.63 -0.2
857,403 - Ga0059261_0815 0.63 +0.2
857,403 - Ga0059261_0815 0.63 +0.2
857,414 + Ga0059261_0815 0.64 +0.7
857,415 - Ga0059261_0815 0.64 +1.0
857,908 - +0.4
857,932 + +0.7
857,932 + +0.1
857,932 + +0.1
857,932 + -0.8
857,933 - -0.2
857,933 - -0.5
857,982 + -0.3
857,983 - -2.1
857,983 - +1.0
857,983 - -0.1
857,983 - +0.1
857,983 - +0.7
857,983 - -0.2
857,983 - -1.9
857,983 - -0.6
857,983 - +0.2
857,987 + -0.8
857,987 + -0.1
857,987 + +0.1
857,988 - +0.1
857,988 - -0.3
857,988 - +0.2
857,988 - +0.2
857,997 - -0.4
858,152 - Ga0059261_0816 0.84 +0.8
858,152 - Ga0059261_0816 0.84 +0.1
858,152 - Ga0059261_0816 0.84 +0.3
858,477 + Ga0059261_0817 0.14 +0.2
858,478 - Ga0059261_0817 0.14 -0.8
858,706 + Ga0059261_0817 0.27 -0.4
858,706 + Ga0059261_0817 0.27 -0.3

Or see this region's nucleotide sequence