Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0719

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0717 and Ga0059261_0718 are separated by 41 nucleotidesGa0059261_0718 and Ga0059261_0719 overlap by 4 nucleotidesGa0059261_0719 and Ga0059261_0720 are separated by 58 nucleotidesGa0059261_0720 and Ga0059261_0721 are separated by 19 nucleotides Ga0059261_0717: Ga0059261_0717 - translation elongation factor P, at 751,585 to 752,148 _0717 Ga0059261_0718: Ga0059261_0718 - Peptidase family M23, at 752,190 to 752,768 _0718 Ga0059261_0719: Ga0059261_0719 - Uncharacterized protein conserved in bacteria, at 752,765 to 753,802 _0719 Ga0059261_0720: Ga0059261_0720 - Predicted small integral membrane protein, at 753,861 to 754,268 _0720 Ga0059261_0721: Ga0059261_0721 - thiamine-phosphate diphosphorylase, at 754,288 to 754,977 _0721 Position (kb) 752 753 754Strain fitness (log2 ratio) -2 -1 0 1at 752.296 kb on + strand, within Ga0059261_0718at 752.296 kb on + strand, within Ga0059261_0718at 752.296 kb on + strand, within Ga0059261_0718at 752.296 kb on + strand, within Ga0059261_0718at 752.296 kb on + strand, within Ga0059261_0718at 752.296 kb on + strand, within Ga0059261_0718at 752.296 kb on + strand, within Ga0059261_0718at 752.296 kb on + strand, within Ga0059261_0718at 752.296 kb on + strand, within Ga0059261_0718at 752.297 kb on - strand, within Ga0059261_0718at 752.297 kb on - strand, within Ga0059261_0718at 752.297 kb on - strand, within Ga0059261_0718at 752.297 kb on - strand, within Ga0059261_0718at 752.297 kb on - strand, within Ga0059261_0718at 752.297 kb on - strand, within Ga0059261_0718at 752.297 kb on - strand, within Ga0059261_0718at 752.297 kb on - strand, within Ga0059261_0718at 752.332 kb on + strand, within Ga0059261_0718at 752.332 kb on + strand, within Ga0059261_0718at 752.332 kb on + strand, within Ga0059261_0718at 752.332 kb on + strand, within Ga0059261_0718at 752.332 kb on + strand, within Ga0059261_0718at 752.332 kb on + strand, within Ga0059261_0718at 752.332 kb on + strand, within Ga0059261_0718at 752.333 kb on - strand, within Ga0059261_0718at 752.333 kb on - strand, within Ga0059261_0718at 752.333 kb on - strand, within Ga0059261_0718at 752.376 kb on - strand, within Ga0059261_0718at 752.386 kb on + strand, within Ga0059261_0718at 752.386 kb on + strand, within Ga0059261_0718at 752.386 kb on + strand, within Ga0059261_0718at 752.404 kb on + strand, within Ga0059261_0718at 752.404 kb on + strand, within Ga0059261_0718at 752.404 kb on + strand, within Ga0059261_0718at 752.404 kb on + strand, within Ga0059261_0718at 752.405 kb on - strand, within Ga0059261_0718at 752.405 kb on - strand, within Ga0059261_0718at 752.405 kb on - strand, within Ga0059261_0718at 752.405 kb on - strand, within Ga0059261_0718at 752.405 kb on - strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.407 kb on + strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.408 kb on - strand, within Ga0059261_0718at 752.410 kb on + strand, within Ga0059261_0718at 752.410 kb on + strand, within Ga0059261_0718at 752.410 kb on + strand, within Ga0059261_0718at 752.410 kb on + strand, within Ga0059261_0718at 752.410 kb on + strand, within Ga0059261_0718at 752.410 kb on + strand, within Ga0059261_0718at 752.410 kb on + strand, within Ga0059261_0718at 752.410 kb on + strand, within Ga0059261_0718at 752.411 kb on - strand, within Ga0059261_0718at 752.411 kb on - strand, within Ga0059261_0718at 752.411 kb on - strand, within Ga0059261_0718at 752.411 kb on - strand, within Ga0059261_0718at 752.411 kb on - strand, within Ga0059261_0718at 752.411 kb on - strand, within Ga0059261_0718at 752.411 kb on - strand, within Ga0059261_0718at 752.412 kb on + strand, within Ga0059261_0718at 752.412 kb on + strand, within Ga0059261_0718at 752.413 kb on - strand, within Ga0059261_0718at 752.413 kb on - strand, within Ga0059261_0718at 752.441 kb on - strand, within Ga0059261_0718at 752.473 kb on + strand, within Ga0059261_0718at 752.473 kb on + strand, within Ga0059261_0718at 752.473 kb on + strand, within Ga0059261_0718at 752.474 kb on - strand, within Ga0059261_0718at 752.474 kb on - strand, within Ga0059261_0718at 752.474 kb on - strand, within Ga0059261_0718at 752.474 kb on - strand, within Ga0059261_0718at 752.474 kb on - strand, within Ga0059261_0718at 752.971 kb on + strand, within Ga0059261_0719at 753.010 kb on + strand, within Ga0059261_0719at 753.011 kb on - strand, within Ga0059261_0719at 753.247 kb on - strand, within Ga0059261_0719at 753.263 kb on + strand, within Ga0059261_0719at 753.264 kb on - strand, within Ga0059261_0719at 753.308 kb on - strand, within Ga0059261_0719at 753.577 kb on + strand, within Ga0059261_0719at 753.650 kb on - strand, within Ga0059261_0719at 753.668 kb on - strand, within Ga0059261_0719at 753.668 kb on - strand, within Ga0059261_0719at 753.995 kb on + strand, within Ga0059261_0720at 753.995 kb on + strand, within Ga0059261_0720at 753.996 kb on - strand, within Ga0059261_0720at 753.996 kb on - strand, within Ga0059261_0720at 754.144 kb on + strand, within Ga0059261_0720at 754.242 kb on + strandat 754.256 kb on + strandat 754.256 kb on + strandat 754.256 kb on + strandat 754.256 kb on + strandat 754.256 kb on + strandat 754.257 kb on - strandat 754.257 kb on - strandat 754.257 kb on - strandat 754.257 kb on - strandat 754.289 kb on + strandat 754.289 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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752,296 + Ga0059261_0718 0.18 +0.8
752,296 + Ga0059261_0718 0.18 +0.9
752,296 + Ga0059261_0718 0.18 -0.0
752,296 + Ga0059261_0718 0.18 -0.1
752,296 + Ga0059261_0718 0.18 -0.0
752,296 + Ga0059261_0718 0.18 +0.0
752,296 + Ga0059261_0718 0.18 +0.1
752,296 + Ga0059261_0718 0.18 +0.9
752,296 + Ga0059261_0718 0.18 +0.2
752,297 - Ga0059261_0718 0.18 +0.6
752,297 - Ga0059261_0718 0.18 +0.1
752,297 - Ga0059261_0718 0.18 -1.2
752,297 - Ga0059261_0718 0.18 -0.8
752,297 - Ga0059261_0718 0.18 +0.9
752,297 - Ga0059261_0718 0.18 -0.1
752,297 - Ga0059261_0718 0.18 +0.1
752,297 - Ga0059261_0718 0.18 -0.3
752,332 + Ga0059261_0718 0.25 +0.7
752,332 + Ga0059261_0718 0.25 +0.9
752,332 + Ga0059261_0718 0.25 -0.6
752,332 + Ga0059261_0718 0.25 -0.1
752,332 + Ga0059261_0718 0.25 +0.3
752,332 + Ga0059261_0718 0.25 -0.4
752,332 + Ga0059261_0718 0.25 -0.7
752,333 - Ga0059261_0718 0.25 +0.8
752,333 - Ga0059261_0718 0.25 +0.7
752,333 - Ga0059261_0718 0.25 +0.0
752,376 - Ga0059261_0718 0.32 +0.4
752,386 + Ga0059261_0718 0.34 +1.4
752,386 + Ga0059261_0718 0.34 -1.7
752,386 + Ga0059261_0718 0.34 +0.2
752,404 + Ga0059261_0718 0.37 -0.0
752,404 + Ga0059261_0718 0.37 -0.1
752,404 + Ga0059261_0718 0.37 -0.3
752,404 + Ga0059261_0718 0.37 -0.1
752,405 - Ga0059261_0718 0.37 -0.7
752,405 - Ga0059261_0718 0.37 +0.4
752,405 - Ga0059261_0718 0.37 -0.8
752,405 - Ga0059261_0718 0.37 +0.4
752,405 - Ga0059261_0718 0.37 +0.1
752,407 + Ga0059261_0718 0.37 -1.4
752,407 + Ga0059261_0718 0.37 +0.1
752,407 + Ga0059261_0718 0.37 +0.2
752,407 + Ga0059261_0718 0.37 +0.3
752,407 + Ga0059261_0718 0.37 -0.2
752,407 + Ga0059261_0718 0.37 -1.9
752,407 + Ga0059261_0718 0.37 +0.7
752,407 + Ga0059261_0718 0.37 -0.8
752,407 + Ga0059261_0718 0.37 -0.3
752,407 + Ga0059261_0718 0.37 -1.2
752,407 + Ga0059261_0718 0.37 -0.5
752,407 + Ga0059261_0718 0.37 -1.9
752,408 - Ga0059261_0718 0.38 +0.3
752,408 - Ga0059261_0718 0.38 +0.1
752,408 - Ga0059261_0718 0.38 -0.4
752,408 - Ga0059261_0718 0.38 -0.2
752,408 - Ga0059261_0718 0.38 +0.3
752,408 - Ga0059261_0718 0.38 -0.8
752,408 - Ga0059261_0718 0.38 +0.0
752,408 - Ga0059261_0718 0.38 -1.1
752,408 - Ga0059261_0718 0.38 +0.2
752,408 - Ga0059261_0718 0.38 +0.6
752,408 - Ga0059261_0718 0.38 +0.2
752,408 - Ga0059261_0718 0.38 +0.2
752,408 - Ga0059261_0718 0.38 -0.1
752,408 - Ga0059261_0718 0.38 +0.7
752,410 + Ga0059261_0718 0.38 -0.4
752,410 + Ga0059261_0718 0.38 -0.3
752,410 + Ga0059261_0718 0.38 -0.4
752,410 + Ga0059261_0718 0.38 -1.0
752,410 + Ga0059261_0718 0.38 -0.3
752,410 + Ga0059261_0718 0.38 +0.7
752,410 + Ga0059261_0718 0.38 -0.4
752,410 + Ga0059261_0718 0.38 -1.1
752,411 - Ga0059261_0718 0.38 +0.0
752,411 - Ga0059261_0718 0.38 +0.2
752,411 - Ga0059261_0718 0.38 +0.6
752,411 - Ga0059261_0718 0.38 -0.6
752,411 - Ga0059261_0718 0.38 -0.9
752,411 - Ga0059261_0718 0.38 -0.4
752,411 - Ga0059261_0718 0.38 -0.1
752,412 + Ga0059261_0718 0.38 -0.2
752,412 + Ga0059261_0718 0.38 -0.5
752,413 - Ga0059261_0718 0.39 -0.1
752,413 - Ga0059261_0718 0.39 +0.1
752,441 - Ga0059261_0718 0.43 -1.2
752,473 + Ga0059261_0718 0.49 +0.1
752,473 + Ga0059261_0718 0.49 +0.7
752,473 + Ga0059261_0718 0.49 -0.4
752,474 - Ga0059261_0718 0.49 -0.3
752,474 - Ga0059261_0718 0.49 +0.1
752,474 - Ga0059261_0718 0.49 +0.3
752,474 - Ga0059261_0718 0.49 +0.2
752,474 - Ga0059261_0718 0.49 -0.5
752,971 + Ga0059261_0719 0.20 -0.7
753,010 + Ga0059261_0719 0.24 -0.1
753,011 - Ga0059261_0719 0.24 -0.9
753,247 - Ga0059261_0719 0.46 +0.5
753,263 + Ga0059261_0719 0.48 +0.3
753,264 - Ga0059261_0719 0.48 -0.7
753,308 - Ga0059261_0719 0.52 -0.7
753,577 + Ga0059261_0719 0.78 -0.7
753,650 - Ga0059261_0719 0.85 -0.9
753,668 - Ga0059261_0719 0.87 -0.9
753,668 - Ga0059261_0719 0.87 -0.4
753,995 + Ga0059261_0720 0.33 +0.2
753,995 + Ga0059261_0720 0.33 +1.1
753,996 - Ga0059261_0720 0.33 -0.5
753,996 - Ga0059261_0720 0.33 +0.5
754,144 + Ga0059261_0720 0.69 +0.1
754,242 + +0.4
754,256 + -0.7
754,256 + +0.6
754,256 + +0.0
754,256 + -0.1
754,256 + -0.4
754,257 - -0.4
754,257 - -0.0
754,257 - -0.1
754,257 - -0.8
754,289 + +0.4
754,289 + +0.9

Or see this region's nucleotide sequence