Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0655 and Ga0059261_0656 are separated by 52 nucleotides Ga0059261_0656 and Ga0059261_0657 are separated by 17 nucleotides Ga0059261_0657 and Ga0059261_0658 are separated by 119 nucleotides
Ga0059261_0655: Ga0059261_0655 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain/CheW-like domain/Signal transducing histidine kinase, homodimeric domain, at 694,410 to 696,713
_0655
Ga0059261_0656: Ga0059261_0656 - Predicted dehydrogenases and related proteins, at 696,766 to 697,797
_0656
Ga0059261_0657: Ga0059261_0657 - Uncharacterized protein conserved in bacteria, at 697,815 to 698,459
_0657
Ga0059261_0658: Ga0059261_0658 - Beta-lactamase class C and other penicillin binding proteins, at 698,579 to 699,859
_0658
Position (kb) 696
697
698 Strain fitness (log2 ratio) -2
-1
0
1 at 696.060 kb on - strand, within Ga0059261_0655 at 696.581 kb on + strand at 696.582 kb on - strand at 696.757 kb on - strand at 696.757 kb on - strand at 696.757 kb on - strand at 696.757 kb on - strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.763 kb on + strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.764 kb on - strand at 696.767 kb on + strand at 696.767 kb on + strand at 696.768 kb on - strand at 696.921 kb on - strand, within Ga0059261_0656 at 696.921 kb on - strand, within Ga0059261_0656 at 696.921 kb on - strand, within Ga0059261_0656 at 696.921 kb on - strand, within Ga0059261_0656 at 697.175 kb on + strand, within Ga0059261_0656 at 697.175 kb on + strand, within Ga0059261_0656 at 697.733 kb on + strand at 697.733 kb on + strand at 697.733 kb on + strand at 697.733 kb on + strand at 697.733 kb on + strand at 697.734 kb on - strand at 697.734 kb on - strand at 697.734 kb on - strand at 697.734 kb on - strand at 697.766 kb on + strand at 697.916 kb on - strand, within Ga0059261_0657 at 698.547 kb on + strand at 698.783 kb on + strand, within Ga0059261_0658 at 698.783 kb on + strand, within Ga0059261_0658 at 698.783 kb on + strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.784 kb on - strand, within Ga0059261_0658 at 698.786 kb on + strand, within Ga0059261_0658 at 698.786 kb on + strand, within Ga0059261_0658 at 698.786 kb on + strand, within Ga0059261_0658 at 698.786 kb on + strand, within Ga0059261_0658 at 698.787 kb on - strand, within Ga0059261_0658
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 696,060 - Ga0059261_0655 0.72 +0.6 696,581 + +0.2 696,582 - +0.7 696,757 - -0.2 696,757 - -0.4 696,757 - +0.2 696,757 - -0.7 696,763 + +0.1 696,763 + -0.3 696,763 + -1.7 696,763 + -0.2 696,763 + +1.4 696,763 + -0.1 696,763 + +0.1 696,763 + -0.1 696,763 + +0.6 696,764 - +0.5 696,764 - -1.0 696,764 - -0.2 696,764 - +0.2 696,764 - +1.2 696,764 - +0.5 696,767 + -1.2 696,767 + +0.1 696,768 - -0.2 696,921 - Ga0059261_0656 0.15 +0.1 696,921 - Ga0059261_0656 0.15 +0.2 696,921 - Ga0059261_0656 0.15 +1.5 696,921 - Ga0059261_0656 0.15 +0.3 697,175 + Ga0059261_0656 0.40 +0.5 697,175 + Ga0059261_0656 0.40 -0.2 697,733 + +0.5 697,733 + +0.5 697,733 + +0.6 697,733 + +0.5 697,733 + -0.6 697,734 - -2.1 697,734 - +0.3 697,734 - +0.0 697,734 - +0.4 697,766 + +0.0 697,916 - Ga0059261_0657 0.16 +0.3 698,547 + -0.6 698,783 + Ga0059261_0658 0.16 -2.7 698,783 + Ga0059261_0658 0.16 -0.8 698,783 + Ga0059261_0658 0.16 -0.4 698,784 - Ga0059261_0658 0.16 +0.2 698,784 - Ga0059261_0658 0.16 +0.1 698,784 - Ga0059261_0658 0.16 +0.3 698,784 - Ga0059261_0658 0.16 +0.2 698,784 - Ga0059261_0658 0.16 -0.1 698,784 - Ga0059261_0658 0.16 +0.2 698,784 - Ga0059261_0658 0.16 -0.1 698,784 - Ga0059261_0658 0.16 -1.9 698,784 - Ga0059261_0658 0.16 -0.7 698,786 + Ga0059261_0658 0.16 -0.4 698,786 + Ga0059261_0658 0.16 -0.1 698,786 + Ga0059261_0658 0.16 -1.3 698,786 + Ga0059261_0658 0.16 +0.6 698,787 - Ga0059261_0658 0.16 +0.1
Or see this region's nucleotide sequence